MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.5 nTPM
HPA Brain:82.9 nTPM
GTEx:65.5 nTPM
FANTOM5:1.7 Scaled Tags Per Million
Pig:219.9 nTPM
Mouse:216.1 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 82.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.8
1827 Male, age 72, unknown 95.6
1870 Female, age 42, unknown 66.7
2586 Male, age 75, left hemisphere 65.7
2828 Female, age 72, unknown 64.1
2411 Female, age 72, unknown 62.9
2219 Male, age 76, both hemispheres 41.0
2666 Male, age 74, left hemisphere 38.8
1830 Male, age 51, unknown 33.7
1833 Male, age 53, unknown 29.9
2019 Male, age 18, unknown 10.0
Dorsal raphe nucleus
nTPM: 36.1
2298 Female, age 72, unknown 57.0
2750 Male, age 76, both hemispheres 41.5
2016 Female, age 72, unknown 38.1
2047 Male, age 72, unknown 27.1
1828 Male, age 53, unknown 16.9
Inferior colliculus
nTPM: 39.7
2849 Male, age 72, unknown 53.6
1848 Female, age 42, unknown 43.8
2097 Female, age 72, unknown 35.0
1890 Male, age 53, unknown 26.4
Median raphe nucleus
nTPM: 49.6
2220 Male, age 76, midline 49.6
Periaquaductal grey, anterior
nTPM: 68.4
1795 Male, age 51, unknown 106.4
2502 Female, age 75, unknown 71.3
1947 Male, age 18, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 61.4
2850 Male, age 76, both hemispheres 73.8
1831 Male, age 72, unknown 67.1
1840 Male, age 53, unknown 62.7
2464 Female, age 72, unknown 42.2
Periaquaductal grey, lateral
nTPM: 82.9
2053 Male, age 18, unknown 153.5
2140 Male, age 76, both hemispheres 60.7
2272 Male, age 74, both hemispheres 34.3
Pretectal area
nTPM: 58.3
2224 Female, age 72, unknown 185.7
2825 Male, age 18, unknown 145.0
2667 Female, age 75, unknown 57.3
2316 Male, age 76, right hemisphere 53.9
2407 Male, age 75, both hemispheres 37.1
1816 Male, age 51, unknown 35.1
2007 Male, age 72, unknown 30.7
2273 Male, age 74, both hemispheres 27.1
1815 Male, age 53, unknown 27.0
1944 Female, age 72, unknown 25.8
1817 Female, age 42, unknown 16.6
Red nucleus
nTPM: 15.2
2584 Male, age 75, left hemisphere 53.9
2227 Male, age 72, unknown 17.7
2769 Male, age 72, unknown 17.1
1821 Female, age 72, unknown 16.7
2725 Female, age 75, unknown 13.3
2823 Male, age 76, right hemisphere 12.3
1865 Male, age 51, unknown 10.4
1954 Female, age 42, unknown 10.0
1904 Male, age 53, unknown 8.4
2503 Female, age 72, unknown 8.4
2588 Male, age 74, left hemisphere 7.6
2785 Male, age 18, unknown 6.2
Substantia nigra
nTPM: 22.6
1941 Male, age 53, unknown 68.4
1889 Female, age 72, unknown 43.4
2241 Male, age 72, unknown 33.9
2590 Female, age 75, unknown 17.1
2699 Male, age 18, unknown 12.0
1916 Female, age 42, unknown 11.4
1851 Male, age 51, unknown 11.3
2583 Male, age 75, right hemisphere 11.2
2665 Male, age 74, both hemispheres 10.3
2409 Female, age 72, unknown 6.7
Superior colliculus
nTPM: 39.0
2261 Male, age 18, unknown 97.5
1839 Male, age 51, unknown 51.1
1895 Male, age 76, right hemisphere 49.2
1796 Male, age 53, unknown 48.5
2664 Male, age 75, both hemispheres 45.4
2587 Male, age 74, left hemisphere 40.6
1913 Female, age 42, unknown 22.2
2668 Female, age 75, unknown 18.0
2087 Female, age 72, unknown 14.3
1995 Male, age 72, unknown 3.7
Ventral tegmental area
nTPM: 37.7
1915 Female, age 42, unknown 60.3
2021 Male, age 53, unknown 52.8
1942 Male, age 51, unknown 33.9
2218 Male, age 76, both hemispheres 32.6
2223 Female, age 72, unknown 24.4
2410 Female, age 72, unknown 22.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.5
Samples: 139

Max nTPM: 941.8
Min nTPM: 0.9
Std nTPM: 113.9
Median nTPM: 34.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 941.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 560.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 480.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 404.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 310.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 276.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 246.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 236.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 222.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 189.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 186.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.7
FF:10158-103A5 76 years, female 1.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 219.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 126.7
Samples: 4

Max nTPM: 223.4
Min nTPM: 14.3
Sample A Female 223.4
Sample B Female 57.2
Sample C Male 211.9
Sample D Male 14.3
Midbrain
nTPM: 219.9
Samples: 4

Max nTPM: 417.2
Min nTPM: 29.1
Sample A Female 29.1
Sample B Female 128.2
Sample C Male 417.2
Sample D Male 305.1
Periaqueductal gray
nTPM: 111.2
Samples: 3

Max nTPM: 155.8
Min nTPM: 72.5
Sample B Female 72.5
Sample C Male 155.8
Sample D Male 105.4
Superior colliculi
nTPM: 175.8
Samples: 4

Max nTPM: 272.9
Min nTPM: 111.1
Sample A Female 201.5
Sample B Female 117.5
Sample C Male 272.9
Sample D Male 111.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 216.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 216.1
Samples: 4

Max nTPM: 222.2
Min nTPM: 208.7
Sample A Male 221.2
Sample B Male 208.7
Sample C Female 212.4
Sample D Female 222.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
75496134 Antisense, RP_060523_03_F02, Mouse strain C57BL/6J (56 days, male) 12.2
75496136 Antisense, RP_060523_03_H02, Mouse strain C57BL/6J (56 days, male) 12.0
75492322 Antisense, RP_060523_03_F02, Mouse strain C57BL/6J (56 days, male) 11.8
75457438 Antisense, RP_060523_03_E02, Mouse strain C57BL/6J (56 days, male) 11.5
75496133 Antisense, RP_060523_03_E02, Mouse strain C57BL/6J (56 days, male) 11.5
75496135 Antisense, RP_060523_03_G02, Mouse strain C57BL/6J (56 days, male) 11.5
75492430 Antisense, RP_060523_03_H02, Mouse strain C57BL/6J (56 days, male) 11.2
75457440 Antisense, RP_060523_03_G02, Mouse strain C57BL/6J (56 days, male) 10.8
75492224 Antisense, RP_060523_03_E02, Mouse strain C57BL/6J (56 days, male) 10.5

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