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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
179.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 56.7
2301
Female, age 85, both hemispheres
72.7
1984
Male, age 76, both hemispheres
55.5
2188
Female, age 91, both hemispheres
53.0
2090
Male, age 80, both hemispheres
45.4
Dorsal cochlear nucleus nTPM: 42.4
2187
Female, age 91, both hemispheres
78.3
2058
Male, age 76, both hemispheres
43.6
2370
Male, age 61, both hemispheres
38.3
2802
Male, age 74, right hemisphere
32.6
2378
Male, age 80, both hemispheres
19.3
Dorsal tegmental nucleus nTPM: 55.8
2083
Male, age 80, both hemispheres
71.1
1936
Male, age 76, left hemisphere
63.3
2358
Male, age 61, both hemispheres
60.8
2326
Male, age 74, both hemispheres
27.8
Dorsolateral tegmental area nTPM: 58.9
2751
Female, age 85, both hemispheres
129.8
2654
Male, age 80, both hemispheres
58.9
2141
Male, age 76, both hemispheres
49.5
2360
Male, age 74, both hemispheres
28.8
2337
Male, age 61, both hemispheres
27.6
Kolliker-Fuse nucleus nTPM: 68.2
2793
Female, age 91, left hemisphere
87.7
2315
Male, age 76, right hemisphere
66.5
2163
Male, age 80, both hemispheres
50.3
Lateral lemniscal nuclei nTPM: 144.1
2169
Male, age 76, both hemispheres
174.5
2036
Male, age 80, both hemispheres
166.3
2746
Female, age 85, left hemisphere
159.7
2453
Male, age 74, right hemisphere
141.6
2320
Female, age 91, left hemisphere
78.2
Lateral parabrachial nucleus nTPM: 98.3
2139
Female, age 85, right hemisphere
176.9
2013
Male, age 80, both hemispheres
103.1
2790
Male, age 61, both hemispheres
75.0
2792
Male, age 76, both hemispheres
38.1
Lateral vestibular nucleus nTPM: 41.9
2184
Male, age 76, both hemispheres
47.3
2311
Male, age 80, both hemispheres
36.4
Locus coeruleus nTPM: 96.5
2123
Female, age 91, both hemispheres
180.7
2788
Male, age 74, unknown
95.2
1980
Male, age 76, both hemispheres
92.6
2162
Male, age 80, both hemispheres
82.8
2720
Male, age 74, both hemispheres
78.6
2014
Male, age 55, unknown
72.7
2317
Female, age 72, unknown
72.7
Medial parabrachial nucleus nTPM: 90.2
2170
Female, age 91, both hemispheres
144.8
2463
Female, age 85, right hemisphere
94.5
2854
Male, age 80, both hemispheres
93.7
2156
Male, age 61, both hemispheres
60.9
2786
Male, age 76, both hemispheres
57.2
Medial periolivary nuclei nTPM: 141.6
2171
Female, age 85, both hemispheres
262.5
2063
Male, age 76, both hemispheres
195.1
2791
Male, age 74, right hemisphere
115.9
2081
Male, age 80, both hemispheres
77.8
2458
Female, age 91, both hemispheres
56.7
Motor facial nucleus nTPM: 133.1
2062
Male, age 76, both hemispheres
196.2
2327
Male, age 80, both hemispheres
155.4
2365
Male, age 74, right hemisphere
154.1
2697
Female, age 85, both hemispheres
152.5
2795
Female, age 91, both hemispheres
85.1
2126
Male, age 61, both hemispheres
55.1
Motor trigeminal nucleus nTPM: 90.8
2079
Male, age 80, both hemispheres
158.0
2560
Male, age 74, both hemispheres
88.8
2309
Male, age 76, both hemispheres
75.4
2335
Male, age 61, both hemispheres
72.3
2321
Female, age 91, both hemispheres
59.2
Nuclei of the trapezoid body nTPM: 166.1
2735
Female, age 85, both hemispheres
255.9
1983
Male, age 76, both hemispheres
200.1
2159
Male, age 61, both hemispheres
183.8
2166
Male, age 80, both hemispheres
121.1
2368
Female, age 91, both hemispheres
69.6
Nucleus raphe magnus nTPM: 179.1
2172
Female, age 85, both hemispheres
279.5
2160
Male, age 61, both hemispheres
273.9
2455
Male, age 74, both hemispheres
190.7
2328
Male, age 80, both hemispheres
138.0
2051
Male, age 76, both hemispheres
124.7
2459
Female, age 91, both hemispheres
68.0
Paramedian reticular nucleus nTPM: 101.9
2050
Female, age 85, both hemispheres
157.1
2313
Male, age 61, both hemispheres
123.6
2057
Male, age 80, both hemispheres
68.9
2052
Male, age 76, both hemispheres
57.9
Pedunculopontine tegmental nucleus nTPM: 82.2
1921
Female, age 85, both hemispheres
110.8
2338
Male, age 61, both hemispheres
74.9
2334
Male, age 80, both hemispheres
61.1
Pontine nuclei nTPM: 146.1
2787
Female, age 85, both hemispheres
281.7
2727
Male, age 61, right hemisphere
200.9
1863
Male, age 55, unknown
169.2
1968
Male, age 76, left hemisphere
160.5
2109
Female, age 72, unknown
129.9
2115
Male, age 80, left hemisphere
96.3
2319
Female, age 91, both hemispheres
67.8
2454
Male, age 74, left hemisphere
62.4
Pontine raphe nucleus nTPM: 120.6
2122
Female, age 85, midline
165.9
2853
Male, age 76, midline
75.4
Posteroventral cochlear nucleus nTPM: 53.2
2752
Female, age 85, both hemispheres
100.6
2070
Male, age 76, both hemispheres
76.9
2341
Male, age 80, both hemispheres
52.8
2371
Male, age 61, both hemispheres
27.2
2135
Female, age 91, both hemispheres
8.7
Principal sensory trigeminal nucleus nTPM: 123.2
2158
Male, age 61, both hemispheres
207.2
2008
Male, age 80, left hemisphere
170.1
2367
Female, age 91, left hemisphere
64.4
2324
Male, age 76, both hemispheres
51.1
Reticular pontine nucleus, caudal nTPM: 92.9
2332
Male, age 80, right hemisphere
150.9
2092
Male, age 76, both hemispheres
135.0
2457
Female, age 91, both hemispheres
50.4
2559
Male, age 74, both hemispheres
35.2
Reticular pontine nucleus, oral nTPM: 116.0
2012
Female, age 85, both hemispheres
149.0
1939
Male, age 80, both hemispheres
138.9
2167
Male, age 76, both hemispheres
133.1
2361
Male, age 74, both hemispheres
99.8
2366
Female, age 91, both hemispheres
59.3
Reticulotegmental nucleus nTPM: 79.4
2325
Male, age 76, both hemispheres
127.8
2333
Male, age 80, both hemispheres
70.1
2452
Male, age 74, both hemispheres
63.4
2322
Female, age 91, both hemispheres
56.1
Spinal trigeminal nucleus, oral nTPM: 42.5
2737
Female, age 85, both hemispheres
53.9
1978
Male, age 76, both hemispheres
39.8
2164
Male, age 80, both hemispheres
33.6
Subcoeruleus area nTPM: 101.4
1958
Male, age 80, both hemispheres
135.6
2089
Male, age 76, left hemisphere
134.5
2323
Female, age 91, left hemisphere
129.8
2369
Female, age 85, left hemisphere
67.9
2451
Male, age 74, both hemispheres
39.2
Superior olive nTPM: 132.0
1875
Female, age 85, both hemispheres
213.1
2020
Male, age 76, both hemispheres
130.7
2329
Male, age 80, right hemisphere
122.9
2364
Male, age 74, right hemisphere
106.5
2561
Female, age 91, both hemispheres
86.6
Ventral periolivary nuclei nTPM: 173.5
2130
Female, age 85, both hemispheres
243.7
2165
Male, age 80, both hemispheres
197.7
2023
Male, age 76, both hemispheres
132.2
2794
Female, age 91, left hemisphere
120.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 105.6
2449
Male, age 74, both hemispheres
156.2
1959
Male, age 76, both hemispheres
149.5
2161
Male, age 80, both hemispheres
116.7
2840
Female, age 85, both hemispheres
96.5
2359
Male, age 61, both hemispheres
77.0
2456
Female, age 91, both hemispheres
37.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
323.9
Pig sample
Sample description
nTPM
Pons nTPM: 323.9
Samples: 4
Max nTPM: 573.4
Min nTPM: 77.4
Sample A
Female
573.4
Sample B
Female
77.4
Sample C
Male
209.9
Sample D
Male
434.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
