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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:503.9 nTPM
HPA Brain:110.8 nTPM
GTEx:503.9 nTPM
FANTOM5:76.3 Scaled Tags Per Million
Pig:128.4 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.8
Sample id Sample description nTPM
Amygdala
nTPM: 110.8
2814 Male, age 76, right hemisphere 147.6
2514 Male, age 75, right hemisphere 114.0
2695 Female, age 67, right hemisphere 108.4
2517 Female, age 94, left hemisphere 92.8
1987 Female, age 91, left hemisphere 91.1
Basal amygdala
nTPM: 77.0
1955 Male, age 76, both hemispheres 112.3
2609 Male, age 75, right hemisphere 94.8
2685 Female, age 94, left hemisphere 72.6
2110 Male, age 80, left hemisphere 72.3
2243 Female, age 91, right hemisphere 64.5
2827 Female, age 67, right hemisphere 45.7
Central amygdala
nTPM: 95.9
1905 Male, age 76, both hemispheres 161.9
2826 Female, age 94, left hemisphere 112.8
2515 Male, age 75, right hemisphere 79.2
2239 Male, age 80, left hemisphere 72.6
2701 Female, age 91, right hemisphere 53.1
Corticomedial amygdala
nTPM: 76.4
2829 Male, age 80, left hemisphere 96.7
2428 Male, age 75, right hemisphere 92.1
2429 Female, age 94, left hemisphere 83.3
2240 Male, age 76, both hemispheres 80.4
2242 Female, age 91, right hemisphere 62.9
2535 Female, age 67, right hemisphere 43.2
Lateral amygdala
nTPM: 81.5
1883 Male, age 76, both hemispheres 125.0
2516 Male, age 75, right hemisphere 102.3
2534 Female, age 94, left hemisphere 84.1
2255 Female, age 91, right hemisphere 61.0
2830 Female, age 67, right hemisphere 59.1
2256 Male, age 80, left hemisphere 57.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

503.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 503.9
Samples: 152

Max nTPM: 2827.9
Min nTPM: 87.7
Std nTPM: 291.3
Median nTPM: 436.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2827.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1440.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1421.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1345.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1309.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1272.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1087.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1085.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 913.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 868.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 866.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 776.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 756.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 691.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 691.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 678.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 667.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 657.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 654.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 651.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 643.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 641.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 640.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 636.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 615.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 603.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 599.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 598.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 598.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 586.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 585.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 584.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 581.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 577.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 576.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 568.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 562.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 556.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 554.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 546.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 540.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 531.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 531.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 529.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 529.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 528.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 525.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 524.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 523.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 517.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 512.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 512.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 509.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 506.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 506.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 506.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 505.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 498.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 494.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 488.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 485.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 484.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 484.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 480.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 479.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 477.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 474.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 471.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 470.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 462.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 452.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 447.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 446.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 442.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 441.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 436.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 435.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 433.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 433.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 429.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 429.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 424.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 420.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 419.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 417.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 415.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 409.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 409.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 408.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 397.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 397.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 395.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 394.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 394.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 392.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 392.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 388.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 386.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 382.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 381.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 378.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 378.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 372.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 369.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 368.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 368.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 368.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 368.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 366.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 366.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 365.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 363.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 362.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 361.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 358.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 357.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 355.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 350.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 350.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 347.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 344.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 341.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 340.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 338.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 336.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 336.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 333.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 326.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 322.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 321.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 318.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 316.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 314.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 309.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 298.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 287.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 284.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 279.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 278.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 278.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 273.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 270.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 268.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 263.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 260.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 259.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 254.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 251.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 251.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 251.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 245.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 87.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

76.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 76.3
FF:10151-102I7 76 years, female 76.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.4
Pig sample Sample description nTPM
Amygdala
nTPM: 128.4
Samples: 4

Max nTPM: 164.8
Min nTPM: 68.9
Sample A Female 164.8
Sample B Female 146.2
Sample C Male 133.7
Sample D Male 68.9

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