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RPL38
HPA
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  • SUMMARY

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  • RPL38
CANCER STOMACH CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
STAD TCGA PROTEIN EXPRESSION
ANTIBODIES
AND
VALIDATION
Dictionary
Stomach cancer
Human cancer
Stomach adenocarcinoma
STOMACH ADENOCARCINOMA (TCGA) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

RPL38 is not prognostic in Stomach Adenocarcinoma (TCGA)


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 1687.34
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average pTPM 2537.2
Number of samples 346
Samples
Sample Description pTPM
TCGA-BR-8059-01A 72 years, male, white, stage:Stage III, dead, 439 days 7166.5
TCGA-R5-A7ZF-01A 65 years, female, black or african american, stage:Stage IV, dead, 259 days 6889.8
TCGA-D7-8573-01A 57 years, male, white, stage:Stage IIA, alive, 593 days 6719.3
TCGA-KB-A6F7-01A 54 years, female, stage:Stage IB, alive, 1935 days 6211.7
TCGA-CD-8527-01A 72 years, female, asian, stage:Stage II, dead, 218 days 6036.5
TCGA-CD-8525-01A 82 years, female, asian, stage:Stage IIIA, alive, 383 days 5514.0
TCGA-IN-A7NT-01A 73 years, female, white, stage:Stage IIB, alive, 323 days 5420.8
TCGA-HU-A4H5-01A 71 years, male, asian, stage:Stage IB, alive, 724 days 5334.2
TCGA-VQ-A94T-01A 73 years, male, stage:Stage IIIB, dead, 342 days 5216.5
TCGA-D7-A74A-01A 61 years, female, white, stage:Stage IIIA, alive, 607 days 4753.8
TCGA-VQ-A91Z-01A 67 years, female, white, stage:Stage IIIA, alive, 1690 days 4653.7
TCGA-D7-A748-01A 41 years, female, white, stage:Stage IV, dead, 132 days 4643.6
TCGA-VQ-A8PH-01A 62 years, male, white, stage:Stage IIIB, dead, 389 days 4564.6
TCGA-IN-A7NU-01A 69 years, male, white, stage:Stage IIIB, alive, 356 days 4548.8
TCGA-EQ-8122-01A 71 years, female, white, stage:Stage IIB, dead, 243 days 4531.2
TCGA-HU-8604-01A 82 years, female, asian, stage:Stage IIA, alive, 694 days 4519.8
TCGA-HJ-7597-01A 71 years, female, white, stage:Stage IB, dead, 805 days 4478.6
TCGA-IN-A6RL-01A 84 years, male, white, stage:'--, dead, 406 days 4476.7
TCGA-BR-8676-01A 59 years, male, white, stage:Stage IIIB, alive, 229 days 4436.0
TCGA-IN-A6RI-01A 45 years, male, white, stage:Stage I, alive, 559 days 4399.8
TCGA-SW-A7EA-01A 61 years, female, white, stage:Stage IB, alive, 579 days 4374.0
TCGA-BR-8289-01A 57 years, male, white, stage:Stage IV, dead, 81 days 4345.8
TCGA-RD-A7BW-01A 68 years, female, white, stage:Stage IB, dead, 156 days 4342.9
TCGA-VQ-A8DV-01A 48 years, male, white, stage:Stage IB, dead, 403 days 4321.9
TCGA-HU-A4GT-01A 71 years, female, asian, stage:Stage IIA, alive, 198 days 4295.1
TCGA-BR-A4QL-01A 75 years, female, white, stage:Stage IIIB, dead, 491 days 4237.7
TCGA-IN-A6RR-01A 84 years, male, white, stage:'--, dead, 205 days 4213.7
TCGA-D7-A6EZ-01A 66 years, male, white, stage:Stage IIIA, dead, 618 days 4208.6
TCGA-BR-8680-01A 45 years, male, asian, stage:Stage IV, alive, 972 days 4147.9
TCGA-HU-A4GQ-01A 71 years, male, asian, stage:Stage IIIC, dead, 3 days 4113.6
TCGA-D7-8574-01A 72 years, male, white, stage:Stage IIIA, alive, 523 days 4065.1
TCGA-RD-A7BS-01A 46 years, male, white, stage:Stage IIIA, dead, 336 days 3979.8
TCGA-CD-8530-01A 51 years, male, asian, stage:Stage II, alive, 377 days 3962.1
TCGA-BR-8361-01A 71 years, female, white, stage:Stage IIIC, alive, 946 days 3957.9
TCGA-FP-8210-01A 48 years, male, asian, stage:Stage IIIA, dead, 153 days 3940.3
TCGA-BR-8371-01A 62 years, male, white, stage:Stage IIIB, dead, 359 days 3896.0
TCGA-CD-8534-01A 41 years, male, asian, stage:Stage II, alive, 367 days 3880.4
TCGA-IN-A6RN-01A 72 years, female, white, stage:Stage IIA, alive, 594 days 3873.4
TCGA-HU-A4H4-01A 53 years, female, asian, stage:Stage IIB, alive, 725 days 3855.5
TCGA-F1-A72C-01A 68 years, male, asian, stage:Stage IIA, alive, 346 days 3826.4
TCGA-VQ-AA6J-01A 75 years, male, black or african american, stage:Stage IIIB, alive, 838 days 3797.0
TCGA-CD-8535-01A 59 years, male, asian, stage:Stage IIIA, alive, 390 days 3782.5
TCGA-3M-AB46-01A 70 years, male, white, stage:Stage IB, alive, 1765 days 3739.2
TCGA-VQ-AA6F-01A 57 years, male, white, stage:Stage IIB, alive, 1646 days 3728.0
TCGA-D7-A4YX-01A 63 years, male, white, stage:Stage IIB, alive, 1108 days 3717.5
TCGA-RD-A7C1-01A 82 years, male, white, stage:Stage IB, dead, 507 days 3715.6
TCGA-IN-7808-01A 59 years, male, white, stage:'--, dead, 105 days 3706.7
TCGA-CD-5800-01A 51 years, female, asian, stage:Stage II, alive, 400 days 3679.8
TCGA-BR-8077-01A 58 years, female, white, stage:Stage IIIB, alive, 21 days 3639.2
TCGA-CG-5724-01A 59 years, male, stage:Stage IV, dead, 366 days 3623.5
TCGA-HU-8238-01A 56 years, male, asian, stage:'--, alive, 46 days 3611.6
TCGA-BR-8677-01A 74 years, female, white, stage:Stage IIIB, alive, 813 days 3609.2
TCGA-BR-8286-01A 49 years, male, white, stage:Stage II, alive, 895 days 3608.0
TCGA-CD-8531-01A 66 years, female, asian, stage:Stage IIIA, alive, 383 days 3606.5
TCGA-BR-8372-01A 63 years, male, white, stage:Stage IIIC, alive, 951 days 3605.4
TCGA-BR-7958-01A 60 years, male, white, stage:Stage IIIB, alive, 899 days 3591.6
TCGA-IN-A7NR-01A 64 years, female, white, stage:Stage IV, alive, 198 days 3582.8
TCGA-BR-7717-01A 63 years, male, white, stage:Stage IV, dead, 552 days 3579.4
TCGA-IN-A6RS-01A 76 years, male, white, stage:Stage IA, alive, 383 days 3531.6
TCGA-B7-A5TK-01A 51 years, male, white, stage:Stage IIIA, alive, 288 days 3525.3
TCGA-R5-A7ZI-01A 44 years, female, white, stage:Stage IV, alive, 2267 days 3519.6
TCGA-BR-8589-01A 56 years, male, white, stage:Stage IIIB, alive, 825 days 3498.6
TCGA-VQ-A8DZ-01A 70 years, male, black or african american, stage:Stage IV, dead, 396 days 3493.2
TCGA-CD-A48A-01A 57 years, male, asian, stage:Stage IIA, alive, 378 days 3467.7
TCGA-B7-5818-01A 62 years, male, white, stage:Stage IB, alive, 356 days 3448.2
TCGA-IN-A6RJ-01A 64 years, male, white, stage:Stage IA, alive, 379 days 3408.9
TCGA-BR-7707-01A 69 years, female, white, stage:Stage IB, alive, 1090 days 3396.6
TCGA-HF-A5NB-01A 75 years, female, stage:Stage IIIC, alive, 928 days 3393.0
TCGA-VQ-A91X-01A 74 years, male, white, stage:Stage IIIB, dead, 289 days 3367.4
TCGA-R5-A7O7-01A 51 years, male, white, stage:Stage IV, alive, 1389 days 3364.0
TCGA-VQ-A8PQ-01A 50 years, female, white, stage:Stage IV, dead, 476 days 3362.0
TCGA-BR-A44T-01A 53 years, female, white, stage:Stage IIA, alive, 1038 days 3352.9
TCGA-BR-6707-01A 75 years, male, white, stage:Stage IIA, dead, 605 days 3316.4
TCGA-BR-8487-01A 64 years, female, white, stage:Stage IIA, alive, 34 days 3314.7
TCGA-VQ-A8E3-01A 79 years, male, white, stage:Stage IIA, dead, 661 days 3313.2
TCGA-D7-8572-01A 57 years, male, white, stage:Stage IIB, alive, 511 days 3307.8
TCGA-VQ-A94R-01A 63 years, male, white, stage:'--, dead, 1294 days 3304.1
TCGA-BR-8690-01A 54 years, female, white, stage:Stage IIIB, alive, 325 days 3299.6
TCGA-D7-6525-01A 58 years, male, white, stage:Stage IIIA, dead, 406 days 3289.6
TCGA-D7-A6EX-01A 72 years, female, white, stage:Stage IIIA, alive, 344 days 3273.0
TCGA-CD-8526-01A 73 years, female, asian, stage:Stage IIIA, alive, 381 days 3250.3
TCGA-BR-8081-01A 71 years, female, white, stage:Stage IIB, alive, 981 days 3246.3
TCGA-VQ-A91S-01A 63 years, male, black or african american, stage:Stage IIIB, alive, 1000 days 3221.7
TCGA-VQ-AA68-01A 52 years, female, white, stage:Stage IIIC, alive, 1328 days 3188.8
TCGA-SW-A7EB-01A 45 years, male, white, stage:Stage IIIA, alive, 176 days 3186.6
TCGA-VQ-A94O-01A 74 years, male, black or african american, stage:Stage IIIC, dead, 640 days 3177.2
TCGA-BR-8686-01A 69 years, male, asian, stage:Stage IIIB, dead, 635 days 3165.8
TCGA-CD-A4MG-01A 76 years, male, asian, stage:Stage IIA, dead, 200 days 3134.0
TCGA-VQ-A8PE-01A 78 years, male, white, stage:Stage IIIB, dead, 675 days 3133.4
TCGA-BR-A4J4-01A 39 years, male, asian, stage:Stage IIIB, alive, 16 days 3117.2
TCGA-BR-8678-01A 76 years, male, white, stage:Stage IB, alive, 754 days 3115.9
TCGA-BR-8366-01A 80 years, female, white, stage:Stage IIA, alive, 29 days 3107.4
TCGA-RD-A7BT-01A 66 years, male, native hawaiian or other pacific islander, stage:Stage IV, dead, 262 days 3073.6
TCGA-B7-A5TN-01A 60 years, male, white, stage:Stage IIB, alive, 287 days 3071.1
TCGA-VQ-A8P5-01A 67 years, male, white, stage:Stage IIA, dead, 235 days 3055.5
TCGA-RD-A8N5-01A 78 years, male, white, stage:Stage IIIA, dead, 1747 days 3034.1
TCGA-HU-A4G2-01A 45 years, male, asian, stage:Stage IIB, alive, 739 days 3030.9
TCGA-BR-8284-01A 72 years, female, white, stage:Stage IIIC, dead, 245 days 3024.0
TCGA-VQ-A8P2-01A 68 years, male, white, stage:Stage IIIA, alive, 1160 days 3023.3
TCGA-RD-A8MW-01A 72 years, male, white, stage:Stage IIIB, dead, 1153 days 2992.7
TCGA-HU-A4GX-01A 70 years, female, asian, stage:Stage IIIC, alive, 616 days 2970.2
TCGA-BR-7957-01A 50 years, female, white, stage:Stage IV, dead, 276 days 2953.1
TCGA-FP-A4BF-01A 68 years, male, white, stage:Stage IIIA, dead, 168 days 2937.0
TCGA-VQ-A8E2-01A 57 years, male, asian, stage:Stage IIIB, alive, 1319 days 2933.7
TCGA-D7-A747-01A 57 years, male, white, stage:Stage IIB, dead, 255 days 2915.9
TCGA-HU-A4H3-01A 56 years, female, asian, stage:Stage IIIC, alive, 882 days 2903.0
TCGA-HF-7133-01A female, stage:Stage IV, alive, 1918 days 2884.5
TCGA-D7-8575-01A 75 years, male, white, stage:Stage IIIA, dead, 554 days 2879.8
TCGA-HU-8249-01A 76 years, male, asian, stage:Stage IIIA, alive, 881 days 2879.7
TCGA-RD-A8N6-01A 78 years, female, white, stage:Stage IIIA, dead, 272 days 2878.6
TCGA-BR-8295-01A 60 years, female, white, stage:Stage IIB, dead, 67 days 2875.0
TCGA-BR-8365-01A 70 years, female, white, stage:Stage IIA, dead, 533 days 2837.6
TCGA-MX-A666-01A 61 years, male, white, stage:Stage IIA, alive, 427 days 2831.3
TCGA-CD-A486-01A 68 years, male, asian, stage:Stage IIA, dead, 192 days 2831.3
TCGA-CG-5722-01A 67 years, female, stage:Stage IV, alive, 30 days 2816.3
TCGA-CD-A487-01A 51 years, male, asian, stage:Stage IIB, alive, 374 days 2813.2
TCGA-R5-A7ZR-01A 70 years, female, black or african american, stage:Stage III, dead, 185 days 2805.5
TCGA-VQ-A922-01A 70 years, male, stage:Stage IV, dead, 275 days 2797.2
TCGA-HU-A4GD-01A 56 years, male, asian, stage:Stage IIB, alive, 692 days 2793.4
TCGA-CD-8524-01A 61 years, female, asian, stage:Stage II, alive, 388 days 2792.7
TCGA-BR-8369-01A 76 years, female, white, stage:Stage IIIB, alive, 427 days 2779.5
TCGA-BR-8381-01A 51 years, male, white, stage:Stage IIB, alive, 224 days 2771.4
TCGA-VQ-A8PB-01A 65 years, female, white, stage:Stage II, dead, 1043 days 2759.0
TCGA-KB-A93H-01A 79 years, female, asian, stage:Stage IIB, alive, 1145 days 2758.7
TCGA-BR-8058-01A 53 years, female, white, stage:Stage IIIB, alive, 1133 days 2758.3
TCGA-VQ-A8PP-01A 76 years, male, stage:Stage IV, dead, 712 days 2757.4
TCGA-VQ-A92D-01A 67 years, male, white, stage:Stage IB, alive, 2032 days 2756.1
TCGA-VQ-AA6D-01A 52 years, female, stage:Stage IIIA, alive, 521 days 2743.6
TCGA-HU-8602-01A 58 years, female, asian, stage:Stage IIB, alive, 679 days 2743.1
TCGA-BR-8368-01A 84 years, female, white, stage:Stage IB, alive, 131 days 2739.4
TCGA-VQ-A8DU-01A 63 years, male, white, stage:Stage IIIA, dead, 166 days 2727.8
TCGA-CD-5798-01A 82 years, male, asian, stage:Stage II, alive, 408 days 2721.0
TCGA-BR-6563-01A 60 years, male, white, stage:Stage IIB, alive, 1190 days 2720.6
TCGA-VQ-AA6A-01A 56 years, male, white, stage:Stage IIIC, alive, 1184 days 2718.2
TCGA-BR-A4J6-01A 69 years, female, white, stage:Stage IIA, alive, 20 days 2709.7
TCGA-HU-A4G8-01A 71 years, female, asian, stage:Stage IIB, alive, 690 days 2698.8
TCGA-CD-8528-01A 43 years, female, asian, stage:Stage IIIA, alive, 375 days 2696.6
TCGA-BR-8060-01A 75 years, female, white, stage:Stage IIB, dead, 348 days 2685.4
TCGA-BR-6566-01A 64 years, female, white, stage:Stage IIA, alive, 997 days 2678.0
TCGA-IN-7806-01A 50 years, male, white, stage:Stage IIB, alive, 1106 days 2677.5
TCGA-VQ-A8PU-01A 72 years, female, white, stage:Stage IIIA, dead, 832 days 2660.3
TCGA-D7-A6F0-01A 79 years, female, white, stage:Stage IB, alive, 678 days 2657.7
TCGA-CD-A48C-01A 79 years, female, asian, stage:Stage IIB, dead, 353 days 2656.0
TCGA-BR-8382-01A 67 years, female, white, stage:Stage IIIC, dead, 762 days 2640.9
TCGA-VQ-A8E0-01A 68 years, male, black or african american, stage:Stage IIIA, dead, 562 days 2629.8
TCGA-BR-7723-01A 59 years, male, white, stage:Stage IIIB, dead, 874 days 2625.4
TCGA-BR-8588-01A 55 years, female, white, stage:Stage IIB, alive, 389 days 2616.3
TCGA-HU-A4GF-01A 69 years, male, asian, stage:Stage IIA, alive, 785 days 2580.3
TCGA-D7-A6EY-01A 72 years, female, white, stage:Stage IIIB, dead, 348 days 2576.1
TCGA-B7-A5TI-01A 52 years, male, white, stage:Stage IIIC, alive, 595 days 2572.4
TCGA-VQ-A8PJ-01A 53 years, male, stage:Stage IV, dead, 82 days 2568.3
TCGA-CG-4437-01A 83 years, male, stage:Stage II, alive, 245 days 2554.5
TCGA-D7-6519-01A 64 years, female, white, stage:'--, alive, 625 days 2546.4
TCGA-BR-4267-01A 51 years, male, white, stage:Stage IB, dead, 188 days 2544.4
TCGA-VQ-A925-01A 66 years, male, white, stage:Stage IIIA, dead, 138 days 2523.2
TCGA-BR-A4PF-01A 72 years, male, white, stage:Stage IIIB, alive, 35 days 2521.2
TCGA-FP-8209-01A 49 years, male, white, stage:Stage IB, dead, 1811 days 2521.1
TCGA-BR-6453-01A 54 years, male, white, stage:Stage IIA, alive, 485 days 2500.8
TCGA-VQ-A8P3-01A 72 years, male, white, stage:Stage IIIA, alive, 1132 days 2487.4
TCGA-HU-A4GU-01A 73 years, male, asian, stage:Stage IIB, alive, 200 days 2478.2
TCGA-BR-7722-01A 62 years, male, white, stage:Stage IIB, dead, 466 days 2472.1
TCGA-VQ-A928-01A 49 years, male, white, stage:Stage IV, dead, 174 days 2465.0
TCGA-VQ-AA64-01A 68 years, male, white, stage:Stage IIIB, dead, 560 days 2448.8
TCGA-VQ-A91A-01A 67 years, male, white, stage:Stage IIIB, alive, 1200 days 2446.4
TCGA-HU-A4GJ-01A 60 years, female, asian, stage:Stage IIIC, alive, 650 days 2445.3
TCGA-IN-AB1X-01A 78 years, female, white, stage:Stage IIA, alive, 411 days 2409.5
TCGA-VQ-A924-01A 69 years, male, stage:Stage II, dead, 1686 days 2408.8
TCGA-CG-5723-01A 83 years, male, stage:Stage II, alive, 2496 days 2406.1
TCGA-BR-8483-01A 59 years, male, white, stage:Stage IIIA, alive, 164 days 2394.1
TCGA-BR-7704-01A 69 years, female, white, stage:Stage II, alive, 1072 days 2383.8
TCGA-BR-A4IV-01A 47 years, male, asian, stage:Stage IIIB, dead, 869 days 2367.1
TCGA-BR-7851-01A 74 years, male, white, stage:Stage IIB, dead, 574 days 2355.2
TCGA-FP-8211-01A 62 years, male, white, stage:Stage IIB, alive, 413 days 2355.2
TCGA-BR-8380-01A 55 years, male, white, stage:Stage IIIC, dead, 21 days 2349.6
TCGA-BR-6705-01A 68 years, female, white, stage:Stage IIIB, dead, 779 days 2309.2
TCGA-CD-5813-01A 60 years, male, asian, stage:Stage II, dead, 377 days 2305.2
TCGA-BR-8592-01A 63 years, female, white, stage:Stage IIIB, dead, 191 days 2288.1
TCGA-BR-7901-01A 74 years, male, white, stage:Stage IIB, dead, 105 days 2286.9
TCGA-HU-A4HB-01A 68 years, male, asian, stage:Stage IIB, dead, 477 days 2285.4
TCGA-CD-8532-01A 52 years, male, asian, stage:Stage II, dead, 354 days 2283.3
TCGA-BR-A4J7-01A 49 years, male, asian, stage:Stage IIB, alive, 989 days 2282.5
TCGA-BR-8364-01A 42 years, female, white, stage:Stage IIIC, alive, 675 days 2281.5
TCGA-BR-7959-01A 59 years, male, white, stage:Stage IIIA, alive, 1010 days 2278.9
TCGA-CG-5721-01A 58 years, male, stage:Stage IV, alive, 183 days 2263.3
TCGA-CG-4443-01A 68 years, male, stage:Stage IA, alive, 912 days 2261.1
TCGA-BR-7715-01A 65 years, male, white, stage:Stage IIA, alive, 1023 days 2260.6
TCGA-F1-6875-01A 79 years, male, black or african american, stage:Stage IA, dead, 2197 days 2246.1
TCGA-HU-A4H0-01A 72 years, male, asian, stage:Stage IIIC, alive, 64 days 2245.5
TCGA-BR-A4J9-01A 55 years, male, white, stage:Stage IIA, alive, 14 days 2233.3
TCGA-BR-4253-01A 80 years, female, white, stage:Stage IIIA, dead, 124 days 2220.2
TCGA-MX-A5UJ-01A 86 years, female, white, stage:Stage IIIA, alive, 600 days 2219.9
TCGA-BR-8296-01A 58 years, female, white, stage:Stage IIIC, dead, 474 days 2216.4
TCGA-VQ-A91U-01A 78 years, male, asian, stage:Stage IIIA, dead, 52 days 2215.3
TCGA-MX-A663-01A 66 years, male, white, stage:Stage IIA, dead, 300 days 2214.6
TCGA-BR-4201-01A 66 years, female, white, stage:'--, dead, 940 days 2207.1
TCGA-HU-8244-01A 77 years, female, asian, stage:Stage IA, alive, 742 days 2205.0
TCGA-BR-8080-01A 72 years, female, white, stage:Stage IIIC, dead, 292 days 2192.4
TCGA-FP-8631-01A 68 years, male, white, stage:Stage IIIA, alive, 17 days 2190.8
TCGA-HU-A4HD-01A 73 years, male, asian, stage:Stage IIIA, alive, 1016 days 2189.4
TCGA-BR-8297-01A 58 years, male, white, stage:Stage IIIC, alive, 225 days 2171.4
TCGA-CD-5801-01A 69 years, male, asian, stage:Stage IIIA, dead, 401 days 2154.7
TCGA-CG-5719-01A 54 years, female, stage:Stage IV, alive, 31 days 2144.1
TCGA-RD-A8NB-01A 80 years, female, white, stage:Stage IIIA, dead, 513 days 2126.8
TCGA-VQ-A91V-01A 58 years, male, stage:Stage IIIA, alive, 1297 days 2116.7
TCGA-CD-5799-01A 45 years, male, asian, stage:Stage II, alive, 396 days 2116.2
TCGA-HU-A4GY-01A 76 years, female, asian, stage:Stage IIIA, alive, 8 days 2105.7
TCGA-VQ-A91Q-01A 61 years, male, stage:Stage IV, dead, 633 days 2098.4
TCGA-RD-A8N9-01A 63 years, female, asian, stage:Stage II, alive, 1083 days 2083.8
TCGA-CD-5803-01A 78 years, female, asian, stage:Stage II, dead, 341 days 2065.7
TCGA-CG-5726-01A 73 years, male, stage:Stage IA, dead, 881 days 2051.8
TCGA-VQ-A91N-01A 59 years, female, stage:Stage IV, dead, 570 days 2049.7
TCGA-VQ-AA69-01A 35 years, male, white, stage:Stage IIIA, alive, 864 days 2048.9
TCGA-BR-4279-01A 43 years, male, white, stage:Stage II, dead, 291 days 2047.0
TCGA-VQ-A8PO-01A 74 years, male, white, stage:Stage IIB, dead, 282 days 2042.6
TCGA-D7-5577-01A 53 years, female, white, stage:Stage IIIA, dead, 782 days 2038.3
TCGA-BR-8367-01A 55 years, male, white, stage:Stage IIIB, dead, 801 days 2034.2
TCGA-D7-8570-01A 44 years, male, white, stage:Stage IIIB, alive, 752 days 2014.8
TCGA-D7-6528-01A 70 years, female, white, stage:Stage IB, alive, 463 days 2013.2
TCGA-BR-8291-01A 61 years, male, white, stage:Stage IIB, dead, 607 days 2011.9
TCGA-VQ-A8DT-01A 43 years, male, stage:Stage IIIB, alive, 1484 days 2003.1
TCGA-IN-AB1V-01A 63 years, male, white, stage:Stage IA, alive, 479 days 1999.8
TCGA-MX-A5UG-01A 78 years, male, asian, stage:Stage IIIA, dead, 113 days 1999.2
TCGA-BR-8485-01A 68 years, female, white, stage:Stage IIIC, alive, 280 days 1992.3
TCGA-BR-6455-01A 59 years, male, white, stage:Stage IIB, dead, 422 days 1984.2
TCGA-FP-8099-01A 79 years, male, white, stage:Stage IIA, alive, 519 days 1962.8
TCGA-CG-4466-01A 81 years, female, stage:Stage IB, alive, 577 days 1935.9
TCGA-BR-A4J5-01A 56 years, male, asian, stage:Stage IIIA, alive, 862 days 1919.9
TCGA-BR-8591-01A 79 years, male, white, stage:Stage IIIC, alive, 856 days 1917.8
TCGA-RD-A8N0-01A 53 years, female, white, stage:Stage IIIB, alive, 1236 days 1914.7
TCGA-FP-7829-01A 69 years, male, white, stage:Stage IIB, alive, 594 days 1913.1
TCGA-CD-8533-01A 48 years, male, asian, stage:Stage II, alive, 468 days 1909.0
TCGA-BR-4280-01A 78 years, female, white, stage:Stage III, dead, 201 days 1896.2
TCGA-FP-7916-01A 77 years, male, asian, stage:Stage IIIC, dead, 428 days 1896.0
TCGA-BR-7197-01A 69 years, male, white, stage:Stage II, alive, 280 days 1884.4
TCGA-HF-7132-01A male, stage:Stage II, alive, 2351 days 1860.2
TCGA-F1-A448-01A 70 years, male, white, stage:Stage IIIB, alive, 647 days 1846.4
TCGA-CG-4475-01A 76 years, male, stage:Stage IIB, alive, 699 days 1837.9
TCGA-ZQ-A9CR-01A 79 years, female, white, stage:Stage IIIC, dead, 24 days 1835.1
TCGA-CD-A489-01A 58 years, male, asian, stage:Stage IIA, dead, 344 days 1824.4
TCGA-RD-A8N1-01A 70 years, male, white, stage:Stage IIIB, alive, 3519 days 1821.8
TCGA-D7-8579-01A 66 years, female, white, stage:Stage IIB, alive, 636 days 1812.4
TCGA-HU-A4H6-01A 72 years, female, asian, stage:Stage IIIA, alive, 644 days 1811.6
TCGA-CG-5725-01A 72 years, male, stage:Stage IB, dead, 457 days 1797.8
TCGA-IN-8462-01A 80 years, male, white, stage:Stage IIB, alive, 572 days 1796.9
TCGA-VQ-A91K-01A 69 years, male, white, stage:Stage IIIA, alive, 1862 days 1791.7
TCGA-HU-A4GC-01A 74 years, male, asian, stage:Stage IIIB, alive, 99 days 1790.6
TCGA-VQ-A94P-01A 57 years, male, white, stage:'--, dead, 81 days 1786.2
TCGA-VQ-A8P8-01A 72 years, female, black or african american, stage:Stage IIB, alive, 942 days 1784.2
TCGA-ZA-A8F6-01A 71 years, male, white, stage:Stage IB, alive, 525 days 1777.4
TCGA-CD-8529-01A 65 years, male, asian, stage:Stage IV, alive, 374 days 1768.4
TCGA-D7-A6EV-01A 71 years, female, white, stage:Stage IIB, alive, 342 days 1763.6
TCGA-VQ-A8PF-01A 76 years, male, stage:Stage IIIB, dead, 76 days 1749.3
TCGA-RD-A8MV-01A 56 years, male, white, stage:Stage IIIB, alive, 3720 days 1742.0
TCGA-BR-7716-01A 62 years, female, white, stage:Stage IIB, alive, 1210 days 1739.8
TCGA-VQ-A94U-01A 70 years, male, white, stage:Stage IIB, alive, 819 days 1739.1
TCGA-VQ-A8PD-01A 69 years, male, white, stage:Stage IIIC, dead, 496 days 1736.8
TCGA-RD-A8N2-01A 59 years, female, white, stage:Stage IB, alive, 3540 days 1714.1
TCGA-BR-8687-01A 67 years, female, white, stage:Stage IIIC, dead, 250 days 1713.4
TCGA-CG-4436-01A 57 years, male, stage:Stage IB, alive, 243 days 1712.7
TCGA-VQ-A8PK-01A 58 years, male, white, stage:Stage IIIB, dead, 543 days 1711.0
TCGA-D7-6522-01A 58 years, male, white, stage:Stage IB, alive, 566 days 1710.9
TCGA-D7-8578-01A 72 years, male, white, stage:Stage IB, alive, 643 days 1701.3
TCGA-BR-8384-01A 69 years, male, white, stage:Stage IIIC, alive, 113 days 1694.1
TCGA-CG-5732-01A 66 years, male, stage:Stage IV, dead, 2100 days 1687.3
TCGA-BR-6564-01A 46 years, female, white, stage:Stage IIIA, dead, 794 days 1687.0
TCGA-D7-6527-01A 62 years, male, white, stage:Stage II, dead, 312 days 1686.9
TCGA-HU-A4G3-01A 54 years, male, asian, stage:Stage IIB, alive, 170 days 1686.0
TCGA-BR-A4CS-01A 77 years, male, white, stage:Stage IIIC, dead, 45 days 1681.8
TCGA-CG-4441-01A 83 years, male, stage:Stage IIIA, dead, 426 days 1678.1
TCGA-FP-A9TM-01A 77 years, male, white, stage:'--, alive, 189 days 1662.1
TCGA-BR-7196-01A 64 years, male, white, stage:Stage IV, alive, 666 days 1656.4
TCGA-CG-4465-01A 69 years, female, stage:Stage IV, dead, 274 days 1654.7
TCGA-VQ-A91Y-01A 67 years, male, white, stage:Stage IIIC, dead, 296 days 1651.8
TCGA-HU-A4G9-01A 67 years, female, asian, stage:Stage IA, alive, 736 days 1647.1
TCGA-CG-4438-01A 56 years, male, stage:Stage IV, alive, 1645 days 1622.8
TCGA-HU-8608-01A 70 years, male, asian, stage:Stage IIIB, alive, 641 days 1621.1
TCGA-FP-7998-01A 77 years, male, white, stage:Stage IIIC, alive, 678 days 1620.6
TCGA-VQ-AA6G-01A 68 years, male, white, stage:Stage IIA, dead, 792 days 1617.5
TCGA-IP-7968-01A 74 years, male, white, stage:Stage IIIB, alive, 77 days 1606.7
TCGA-VQ-A91E-01A 67 years, female, white, stage:Stage IIIB, alive, 664 days 1604.0
TCGA-D7-A4Z0-01A 60 years, female, white, stage:Stage IIB, alive, 449 days 1565.5
TCGA-CG-4440-01A 68 years, female, stage:Stage IV, dead, 122 days 1557.8
TCGA-CG-5720-01A 71 years, male, stage:Stage IB, dead, 30 days 1551.2
TCGA-IN-8663-01A 68 years, male, white, stage:Stage IIB, dead, 103 days 1542.6
TCGA-BR-4257-01A 79 years, female, white, stage:'--, dead, 294 days 1542.0
TCGA-VQ-A8PC-01A 65 years, male, white, stage:Stage IIIA, dead, 1407 days 1542.0
TCGA-VQ-A8PM-01A 56 years, male, white, stage:Stage IV, dead, 57 days 1538.5
TCGA-BR-4187-01A 56 years, male, white, stage:'--, dead, 141 days 1536.5
TCGA-KB-A93G-01A 68 years, male, white, stage:Stage IB, alive, 613 days 1531.6
TCGA-BR-6801-01A 70 years, male, white, stage:Stage IIA, alive, 1223 days 1515.9
TCGA-HU-A4GP-01A 62 years, female, asian, stage:Stage IIA, alive, 273 days 1513.5
TCGA-VQ-AA6K-01A 59 years, male, white, stage:Stage IIIC, dead, 378 days 1509.1
TCGA-CD-A4MH-01A 86 years, female, asian, stage:Stage IIA, alive, 371 days 1504.9
TCGA-BR-A44U-01A 70 years, male, white, stage:Stage IIIB, dead, 422 days 1486.6
TCGA-BR-8590-01A 62 years, male, white, stage:Stage IIIC, dead, 284 days 1483.3
TCGA-D7-5578-01A 80 years, male, white, stage:Stage IIIA, alive, 385 days 1471.6
TCGA-D7-A4YU-01A 73 years, male, white, stage:Stage IIIB, alive, 500 days 1447.6
TCGA-D7-6822-01A 77 years, male, white, stage:Stage IB, alive, 375 days 1445.9
TCGA-CG-4477-01A 58 years, female, stage:Stage IB, alive, 942 days 1439.5
TCGA-BR-A4J8-01A 71 years, female, white, stage:Stage IIIB, alive, 411 days 1430.7
TCGA-CG-4460-01A 66 years, female, stage:Stage IV, dead, 669 days 1423.9
TCGA-BR-8484-01A 61 years, male, white, stage:Stage IIIA, dead, 766 days 1423.5
TCGA-RD-A8N4-01A 58 years, female, white, stage:Stage IIIA, alive, 2171 days 1422.7
TCGA-KB-A93J-01A 78 years, male, white, stage:Stage II, alive, 1124 days 1420.4
TCGA-D7-A6F2-01A 62 years, male, white, stage:Stage IB, alive, 476 days 1406.4
TCGA-BR-6709-01A 57 years, female, white, stage:Stage IIIB, dead, 370 days 1401.3
TCGA-CG-4444-01A 76 years, male, stage:Stage IIIA, alive, 1431 days 1401.1
TCGA-HU-8610-01A 75 years, male, asian, stage:Stage IA, alive, 23 days 1385.3
TCGA-FP-7735-01A 77 years, male, black or african american, stage:Stage IB, dead, 106 days 1380.6
TCGA-BR-6803-01A 54 years, female, white, stage:Stage IIA, alive, 949 days 1372.9
TCGA-BR-6452-01A 78 years, female, white, stage:Stage IIA, alive, 1055 days 1369.4
TCGA-BR-4256-01A 80 years, male, white, stage:'--, dead, 284 days 1353.0
TCGA-BR-4191-01A 72 years, male, white, stage:'--, dead, 558 days 1353.0
TCGA-CG-4306-01A 90 years, male, stage:Stage IV, dead, 1 days 1346.7
TCGA-HF-7134-01A male, stage:Stage IA, alive, 1588 days 1338.5
TCGA-BR-6457-01A 69 years, male, white, stage:Stage IIA, alive, 416 days 1308.1
TCGA-HU-A4H2-01A 58 years, female, asian, stage:Stage IIIB, alive, 394 days 1308.0
TCGA-CG-4301-01A 75 years, female, stage:Stage IV, alive, 92 days 1244.8
TCGA-R5-A805-01A 71 years, male, white, stage:Stage IIIB, dead, 281 days 1240.5
TCGA-BR-8682-01A 52 years, male, asian, stage:Stage IIB, alive, 991 days 1234.5
TCGA-BR-8683-01A 75 years, male, asian, stage:Stage IIIB, dead, 300 days 1229.8
TCGA-BR-8373-01A 65 years, female, white, stage:Stage IIIA, alive, 450 days 1229.2
TCGA-D7-6524-01A 53 years, male, white, stage:Stage II, alive, 543 days 1212.1
TCGA-FP-A8CX-01A 60 years, male, white, stage:Stage IIIC, alive, 7 days 1205.8
TCGA-D7-6521-01A 65 years, male, white, stage:'--, alive, 564 days 1200.6
TCGA-HU-A4GH-01A 75 years, male, asian, stage:Stage IA, alive, 358 days 1199.9
TCGA-CG-4305-01A 69 years, male, stage:Stage II, alive, 485 days 1193.1
TCGA-D7-6818-01A 53 years, male, white, stage:Stage IIIA, dead, 376 days 1192.9
TCGA-D7-8576-01A 54 years, female, white, stage:Stage IIIB, dead, 446 days 1187.2
TCGA-VQ-A927-01A 81 years, male, white, stage:Stage IIIB, dead, 200 days 1184.1
TCGA-D7-6815-01A 70 years, female, white, stage:Stage IIB, alive, 486 days 1175.9
TCGA-B7-A5TJ-01A 74 years, male, white, stage:Stage IIB, alive, 335 days 1175.7
TCGA-BR-6852-01A 64 years, female, white, stage:Stage IIA, alive, 1367 days 1164.4
TCGA-BR-6458-01A 57 years, female, white, stage:Stage IIB, dead, 588 days 1164.0
TCGA-BR-6802-01A 65 years, male, white, stage:Stage IIIA, alive, 940 days 1161.3
TCGA-CG-5717-01A 58 years, male, stage:Stage II, dead, 212 days 1131.8
TCGA-F1-6874-01A 79 years, male, white, stage:Stage IB, alive, 440 days 1118.7
TCGA-BR-6565-01A 67 years, male, white, stage:Stage IIB, dead, 279 days 1106.6
TCGA-CG-4469-01A 70 years, male, stage:Stage IV, dead, 215 days 1037.7
TCGA-VQ-A8PX-01A 51 years, male, stage:Stage IA, alive, 1964 days 1037.3
TCGA-BR-6456-01A 74 years, female, white, stage:Stage IIB, dead, 526 days 1010.7
TCGA-CG-5718-01A 78 years, female, stage:Stage II, dead, 1095 days 1007.2
TCGA-CG-5734-01A 68 years, male, stage:Stage IIIA, dead, 243 days 947.4
TCGA-D7-6526-01A 67 years, female, white, stage:Stage IIIA, alive, 523 days 786.8
TCGA-D7-6520-01A 53 years, male, white, stage:Stage IIIA, alive, 573 days 656.8
TCGA-BR-6710-01A 41 years, male, white, stage:Stage IB, alive, 273 days 334.7
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STOMACH CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.


Antibody HPA052543
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Adenocarcinoma, NOS

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