MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:132.6 nTPM
HPA Brain:102.5 nTPM
GTEx:132.6 nTPM
FANTOM5:117.4 Scaled Tags Per Million
Pig:179.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 102.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.5
2219 Male, age 76, both hemispheres 89.8
1870 Female, age 42, unknown 79.4
2666 Male, age 74, left hemisphere 73.5
2019 Male, age 18, unknown 72.0
1827 Male, age 72, unknown 70.5
2411 Female, age 72, unknown 68.1
1830 Male, age 51, unknown 66.9
1833 Male, age 53, unknown 65.2
2828 Female, age 72, unknown 61.8
2586 Male, age 75, left hemisphere 48.2
Dorsal raphe nucleus
nTPM: 57.7
1828 Male, age 53, unknown 74.0
2750 Male, age 76, both hemispheres 64.8
2047 Male, age 72, unknown 56.3
2298 Female, age 72, unknown 50.7
2016 Female, age 72, unknown 42.9
Inferior colliculus
nTPM: 63.3
2849 Male, age 72, unknown 88.2
1890 Male, age 53, unknown 65.2
1848 Female, age 42, unknown 53.1
2097 Female, age 72, unknown 46.8
Median raphe nucleus
nTPM: 102.5
2220 Male, age 76, midline 102.5
Periaquaductal grey, anterior
nTPM: 66.6
1795 Male, age 51, unknown 71.4
1947 Male, age 18, unknown 65.4
2502 Female, age 75, unknown 62.9
Periaquaductal grey, dorsal
nTPM: 64.8
2850 Male, age 76, both hemispheres 89.1
1831 Male, age 72, unknown 59.1
2464 Female, age 72, unknown 56.8
1840 Male, age 53, unknown 54.2
Periaquaductal grey, lateral
nTPM: 58.7
2272 Male, age 74, both hemispheres 63.5
2140 Male, age 76, both hemispheres 61.5
2053 Male, age 18, unknown 51.1
Pretectal area
nTPM: 74.0
1944 Female, age 72, unknown 97.2
1817 Female, age 42, unknown 89.7
2007 Male, age 72, unknown 88.1
1816 Male, age 51, unknown 85.2
2667 Female, age 75, unknown 77.8
1815 Male, age 53, unknown 77.0
2273 Male, age 74, both hemispheres 67.3
2407 Male, age 75, both hemispheres 65.7
2224 Female, age 72, unknown 65.0
2825 Male, age 18, unknown 58.8
2316 Male, age 76, right hemisphere 42.2
Red nucleus
nTPM: 73.6
2725 Female, age 75, unknown 106.7
2785 Male, age 18, unknown 81.6
2503 Female, age 72, unknown 81.3
1865 Male, age 51, unknown 76.8
1954 Female, age 42, unknown 75.4
2823 Male, age 76, right hemisphere 71.0
2227 Male, age 72, unknown 68.9
1821 Female, age 72, unknown 68.1
1904 Male, age 53, unknown 65.1
2588 Male, age 74, left hemisphere 64.3
2584 Male, age 75, left hemisphere 62.5
2769 Male, age 72, unknown 61.3
Substantia nigra
nTPM: 83.1
1916 Female, age 42, unknown 132.3
2409 Female, age 72, unknown 98.7
2699 Male, age 18, unknown 95.4
1941 Male, age 53, unknown 93.3
2665 Male, age 74, both hemispheres 82.1
1889 Female, age 72, unknown 81.6
1851 Male, age 51, unknown 79.1
2241 Male, age 72, unknown 61.7
2583 Male, age 75, right hemisphere 55.4
2590 Female, age 75, unknown 51.0
Superior colliculus
nTPM: 62.2
1913 Female, age 42, unknown 70.3
2087 Female, age 72, unknown 68.1
1796 Male, age 53, unknown 67.1
2587 Male, age 74, left hemisphere 67.0
2668 Female, age 75, unknown 64.8
2261 Male, age 18, unknown 63.1
1995 Male, age 72, unknown 60.7
1895 Male, age 76, right hemisphere 56.2
1839 Male, age 51, unknown 54.2
2664 Male, age 75, both hemispheres 51.0
Ventral tegmental area
nTPM: 78.8
2218 Male, age 76, both hemispheres 102.3
1915 Female, age 42, unknown 86.0
2410 Female, age 72, unknown 84.1
2223 Female, age 72, unknown 73.9
1942 Male, age 51, unknown 68.8
2021 Male, age 53, unknown 57.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 132.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.6
Samples: 139

Max nTPM: 320.4
Min nTPM: 32.0
Std nTPM: 37.6
Median nTPM: 126.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 320.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 229.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 228.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 212.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 212.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 196.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 196.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 190.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 189.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 188.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 185.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 117.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.4
FF:10158-103A5 76 years, female 117.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 179.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 167.0
Samples: 4

Max nTPM: 211.4
Min nTPM: 111.1
Sample A Female 211.4
Sample B Female 136.4
Sample C Male 208.9
Sample D Male 111.1
Midbrain
nTPM: 175.4
Samples: 4

Max nTPM: 204.7
Min nTPM: 147.5
Sample A Female 176.4
Sample B Female 204.7
Sample C Male 173.1
Sample D Male 147.5
Periaqueductal gray
nTPM: 179.9
Samples: 3

Max nTPM: 205.3
Min nTPM: 142.8
Sample B Female 191.5
Sample C Male 205.3
Sample D Male 142.8
Superior colliculi
nTPM: 168.8
Samples: 4

Max nTPM: 210.4
Min nTPM: 105.6
Sample A Female 210.4
Sample B Female 105.6
Sample C Male 184.7
Sample D Male 174.6

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