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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:367.9 nTPM
HPA Brain:172.6 nTPM
GTEx:367.9 nTPM
FANTOM5:164.1 Scaled Tags Per Million
Pig:192.0 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 137.1
1981 Female, age 72, midline 203.1
2048 Male, age 55, midline 152.1
2194 Female, age 79, both hemispheres 114.4
2565 Male, age 75, midline 111.5
2816 Male, age 47, midline 104.4
Cervical spinal cord, dorsal horn
nTPM: 172.6
2173 Female, age 72, unknown 243.2
2069 Male, age 47, both hemispheres 206.4
2296 Male, age 66, both hemispheres 172.5
2297 Male, age 75, both hemispheres 143.5
1877 Male, age 55, unknown 142.9
2721 Male, age 90, both hemispheres 127.1
Cervical spinal cord, ventral horn
nTPM: 148.2
2480 Male, age 75, both hemispheres 201.0
2098 Female, age 72, unknown 182.8
2295 Male, age 66, both hemispheres 151.1
2809 Male, age 90, both hemispheres 138.9
2068 Male, age 55, unknown 131.4
2820 Female, age 79, both hemispheres 84.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

367.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 367.9
Samples: 159

Max nTPM: 835.7
Min nTPM: 165.7
Std nTPM: 108.4
Median nTPM: 347.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 835.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 749.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 665.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 640.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 637.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 607.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 597.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 585.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 555.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 551.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 546.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 544.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 532.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 528.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 528.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 519.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 496.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 492.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 489.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 479.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 478.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 476.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 467.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 466.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 458.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 458.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 452.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 451.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 450.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 447.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 437.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 437.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 435.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 435.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 433.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 429.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 426.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 423.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 423.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 422.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 419.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 419.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 416.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 415.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 413.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 411.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 409.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 409.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 409.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 408.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 401.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 401.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 400.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 399.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 398.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 397.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 395.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 395.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 391.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 389.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 387.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 384.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 381.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 378.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 376.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 374.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 368.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 367.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 367.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 364.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 363.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 362.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 362.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 361.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 358.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 352.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 349.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 349.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 347.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 347.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 343.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 343.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 341.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 339.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 338.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 338.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 337.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 336.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 336.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 334.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 333.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 332.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 331.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 331.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 328.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 326.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 325.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 322.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 319.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 319.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 318.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 318.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 318.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 316.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 313.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 312.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 311.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 310.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 306.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 306.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 304.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 303.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 303.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 300.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 299.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 298.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 298.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 295.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 293.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 293.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 290.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 289.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 286.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 285.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 283.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 282.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 282.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 277.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 276.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 273.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 272.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 270.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 269.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 266.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 265.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 262.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 261.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 258.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 257.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 252.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 249.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 249.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 244.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 243.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 243.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 243.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 238.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 237.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 237.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 234.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 229.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 228.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 226.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 224.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 222.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 219.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 208.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 195.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 165.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

164.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 164.1
FF:10181-103D1 60 years, female 190.9
FF:10159-103A6 76 years, female 137.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 161.9
Samples: 4

Max nTPM: 176.7
Min nTPM: 145.9
Sample A Female 176.7
Sample B Female 152.1
Sample C Male 172.8
Sample D Male 145.9
Ventral spinal cord
nTPM: 192.0
Samples: 4

Max nTPM: 232.8
Min nTPM: 158.7
Sample A Female 168.4
Sample B Female 232.8
Sample C Male 208.0
Sample D Male 158.7

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