We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPL4
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RPL4
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:339.8 nTPM
GTEx:339.8 nTPM
FANTOM5:22.3 Scaled Tags Per Million
Pig:171.3 nTPM
Mouse:904.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

339.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 339.8
Samples: 105

Max nTPM: 544.1
Min nTPM: 120.3
Std nTPM: 84.8
Median nTPM:
6_1 73 years, female 544.1
321_1 62 years, female 529.8
153_1 70 years, female 508.4
320_1 89 years, female 504.7
322_1 76 years, male 501.3
389_1 86 years, female 497.0
120_1 70 years, female 475.1
319_1 81 years, male 473.1
335_1 73 years, female 467.5
35_1 74 years, female 465.4
137_1 83 years, male 465.2
17_1 71 years, male 460.5
126_1 63 years, male 444.0
2_1 77 years, female 439.8
115_1 83 years, male 439.7
246_1 77 years, male 436.5
404_1 82 years, female 434.8
376_1 75 years, female 433.6
41_1 94 years, female 432.5
405_1 91 years, male 428.8
18_1 88 years, male 422.0
145_1 84 years, male 414.3
318_1 68 years, male 413.4
99_1 64 years, male 410.2
189_1 76 years, male 400.9
526_1 61 years, male 400.9
317_1 60 years, male 399.7
347_1 72 years, male 398.8
355_1 70 years, female 396.9
251_1 78 years, male 383.1
406_1 79 years, male 383.1
139_1 64 years, female 382.5
109_1 81 years, female 381.1
425_1 59 years, female 377.3
452_1 88 years, female 374.7
384_1 83 years, male 369.2
503_1 68 years, male 362.9
517_1 88 years, male 362.3
243_1 75 years, male 361.2
218_1 71 years, female 356.3
311_1 78 years, male 347.7
447_1 81 years, male 345.3
495_1 57 years, female 341.8
352_1 62 years, male 339.5
4_1 88 years, female 338.9
396_1 62 years, male 338.4
394_1 75 years, female 337.7
506_1 65 years, male 337.7
377_1 82 years, female 336.6
468_1 89 years, male 336.5
229_1 69 years, female 335.3
173_1 67 years, male 335.0
316_1 62 years, male 333.2
81_1 67 years, male 330.6
9_1 66 years, female 329.2
348_1 84 years, male 326.7
307_1 66 years, female 326.3
286_1 68 years, female 322.4
386_1 76 years, male 322.4
353_1 82 years, female 316.1
518_1 75 years, female 315.3
379_1 60 years, male 313.3
163_1 78 years, male 312.4
162_1 79 years, female 307.6
324_1 76 years, male 303.1
117_1 61 years, male 302.9
254_1 77 years, female 301.5
480_1 63 years, male 299.9
266_1 85 years, male 298.8
295_1 61 years, female 298.7
217_1 76 years, male 298.0
32_1 67 years, male 296.8
288_1 66 years, female 293.1
350_1 84 years, female 291.8
291_1 76 years, male 291.5
237_1 82 years, male 290.9
172_1 72 years, female 287.8
293_1 68 years, female 287.5
354_1 81 years, female 279.6
177_1 74 years, male 277.3
265_1 87 years, male 276.9
119_1 70 years, female 276.3
142_1 61 years, female 274.0
499_1 55 years, female 273.5
42_1 85 years, male 272.6
292_1 71 years, male 269.9
356_1 87 years, female 269.5
415_1 77 years, female 263.8
308_1 70 years, female 258.8
314_1 67 years, male 255.9
315_1 62 years, female 255.7
375_1 74 years, female 253.1
349_1 83 years, male 244.4
414_1 84 years, female 243.2
313_1 79 years, female 242.5
466_1 57 years, female 241.2
43_1 64 years, female 240.7
89_1 63 years, male 240.3
264_1 73 years, female 211.8
149_1 88 years, male 211.4
351_1 91 years, male 198.9
501_1 88 years, male 192.1
413_1 59 years, female 176.9
491_1 89 years, female 155.6
490_1 67 years, female 120.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

22.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 22.3
FF:10030-101E3 24-65 years, mixed 22.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.3
Pig sample Sample description nTPM
Retina
nTPM: 171.3
Samples: 4

Max nTPM: 189.1
Min nTPM: 157.4
Sample A Female 166.4
Sample B Female 172.2
Sample C Male 189.1
Sample D Male 157.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

904.6
Mouse sample Sample description nTPM
Retina
nTPM: 904.7
Samples: 4

Max nTPM: 967.4
Min nTPM: 810.1
Sample A Male 954.5
Sample B Male 810.1
Sample C Female 886.6
Sample D Female 967.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org