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RPL4
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:493.3 nTPM
HPA:471.1 nTPM
GTEx:493.3 nTPM
FANTOM5:25.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA034600
Glandular cells Low


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

471.1
overview
Male, age 65
Small intestine sample 232
nTPM: 508
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 476.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 463.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 436.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

493.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 493.3
Samples: 187

Max nTPM: 1204.8
Min nTPM: 147.9
Std nTPM: 208.5
Median nTPM: 470.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1204.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1066.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1049.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1022.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1018.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1010.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 930.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 880.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 868.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 851.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 831.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 823.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 822.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 818.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 812.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 808.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 804.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 789.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 784.4
GTEX-1192X-2526-SM-59868 50-59 years, male 765.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 755.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 738.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 736.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 725.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 723.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 722.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 707.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 706.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 706.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 691.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 687.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 684.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 682.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 680.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 679.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 675.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 668.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 666.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 659.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 657.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 657.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 656.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 654.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 654.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 638.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 635.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 631.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 621.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 619.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 616.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 616.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 612.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 608.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 606.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 605.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 595.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 594.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 590.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 580.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 574.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 570.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 564.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 564.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 564.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 561.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 559.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 558.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 557.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 556.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 550.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 549.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 549.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 544.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 537.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 532.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 530.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 523.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 512.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 509.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 505.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 505.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 501.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 493.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 490.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 490.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 488.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 480.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 479.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 479.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 479.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 479.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 479.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 474.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 470.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 469.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 466.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 465.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 465.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 464.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 462.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 462.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 461.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 459.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 449.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 445.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 445.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 443.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 438.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 436.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 432.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 422.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 422.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 417.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 415.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 402.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 397.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 393.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 393.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 392.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 387.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 385.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 378.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 375.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 374.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 371.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 371.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 364.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 362.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 359.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 359.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 353.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 353.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 345.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 343.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 340.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 336.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 333.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 328.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 324.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 318.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 318.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 317.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 316.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 312.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 307.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 306.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 305.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 305.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 301.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 300.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 299.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 299.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 297.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 296.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 296.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 290.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 289.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 288.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 283.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 278.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 277.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 265.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 263.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 262.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 251.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 249.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 248.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 245.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 238.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 236.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 227.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 224.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 224.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 217.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 215.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 214.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 211.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 211.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 202.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 200.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 198.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 187.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 181.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 162.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 153.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 151.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 147.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 25.5
FF:10024-101D6 15,40,85 years, mixed 25.5

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