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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
343.7
nTPM
FANTOM5:
378.2
Scaled Tags Per Million
Pig:
144.6
nTPM
Allen mouse:
2.9
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
343.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 343.7
2301
Female, age 85, both hemispheres
464.9
2188
Female, age 91, both hemispheres
362.3
2090
Male, age 80, both hemispheres
346.2
1984
Male, age 76, both hemispheres
201.5
Dorsal cochlear nucleus nTPM: 259.0
2187
Female, age 91, both hemispheres
338.9
2378
Male, age 80, both hemispheres
320.7
2802
Male, age 74, right hemisphere
222.9
2058
Male, age 76, both hemispheres
212.7
2370
Male, age 61, both hemispheres
199.8
Dorsal tegmental nucleus nTPM: 224.8
2083
Male, age 80, both hemispheres
299.1
2326
Male, age 74, both hemispheres
253.9
1936
Male, age 76, left hemisphere
195.7
2358
Male, age 61, both hemispheres
150.5
Dorsolateral tegmental area nTPM: 239.9
2751
Female, age 85, both hemispheres
380.2
2654
Male, age 80, both hemispheres
281.5
2337
Male, age 61, both hemispheres
259.5
2360
Male, age 74, both hemispheres
155.5
2141
Male, age 76, both hemispheres
122.7
Kolliker-Fuse nucleus nTPM: 257.5
2793
Female, age 91, left hemisphere
355.8
2163
Male, age 80, both hemispheres
240.5
2315
Male, age 76, right hemisphere
176.3
Lateral lemniscal nuclei nTPM: 246.7
2320
Female, age 91, left hemisphere
321.5
2036
Male, age 80, both hemispheres
251.0
2169
Male, age 76, both hemispheres
224.8
2746
Female, age 85, left hemisphere
219.7
2453
Male, age 74, right hemisphere
216.5
Lateral parabrachial nucleus nTPM: 292.3
2792
Male, age 76, both hemispheres
424.6
2013
Male, age 80, both hemispheres
297.6
2790
Male, age 61, both hemispheres
267.5
2139
Female, age 85, right hemisphere
179.4
Lateral vestibular nucleus nTPM: 280.8
2311
Male, age 80, both hemispheres
343.9
2184
Male, age 76, both hemispheres
217.7
Locus coeruleus nTPM: 126.8
2162
Male, age 80, both hemispheres
177.1
2720
Male, age 74, both hemispheres
155.2
2317
Female, age 72, unknown
124.9
2788
Male, age 74, unknown
124.0
2123
Female, age 91, both hemispheres
115.1
2014
Male, age 55, unknown
112.4
1980
Male, age 76, both hemispheres
78.8
Medial parabrachial nucleus nTPM: 288.3
2170
Female, age 91, both hemispheres
392.7
2854
Male, age 80, both hemispheres
304.8
2463
Female, age 85, right hemisphere
298.7
2786
Male, age 76, both hemispheres
235.8
2156
Male, age 61, both hemispheres
209.5
Medial periolivary nuclei nTPM: 256.7
2458
Female, age 91, both hemispheres
309.3
2081
Male, age 80, both hemispheres
302.1
2791
Male, age 74, right hemisphere
277.6
2063
Male, age 76, both hemispheres
229.0
2171
Female, age 85, both hemispheres
165.5
Motor facial nucleus nTPM: 277.2
2126
Male, age 61, both hemispheres
363.8
2365
Male, age 74, right hemisphere
318.4
2697
Female, age 85, both hemispheres
306.4
2327
Male, age 80, both hemispheres
244.8
2795
Female, age 91, both hemispheres
244.4
2062
Male, age 76, both hemispheres
185.4
Motor trigeminal nucleus nTPM: 241.8
2321
Female, age 91, both hemispheres
306.0
2560
Male, age 74, both hemispheres
261.2
2309
Male, age 76, both hemispheres
235.2
2079
Male, age 80, both hemispheres
211.6
2335
Male, age 61, both hemispheres
195.1
Nuclei of the trapezoid body nTPM: 236.7
2166
Male, age 80, both hemispheres
303.6
2368
Female, age 91, both hemispheres
282.5
2159
Male, age 61, both hemispheres
256.1
1983
Male, age 76, both hemispheres
201.5
2735
Female, age 85, both hemispheres
140.0
Nucleus raphe magnus nTPM: 233.8
2459
Female, age 91, both hemispheres
323.5
2328
Male, age 80, both hemispheres
299.2
2051
Male, age 76, both hemispheres
259.2
2455
Male, age 74, both hemispheres
240.8
2160
Male, age 61, both hemispheres
155.3
2172
Female, age 85, both hemispheres
125.1
Paramedian reticular nucleus nTPM: 267.4
2052
Male, age 76, both hemispheres
320.2
2057
Male, age 80, both hemispheres
284.9
2050
Female, age 85, both hemispheres
235.4
2313
Male, age 61, both hemispheres
228.9
Pedunculopontine tegmental nucleus nTPM: 227.1
2334
Male, age 80, both hemispheres
245.4
2338
Male, age 61, both hemispheres
244.9
1921
Female, age 85, both hemispheres
190.9
Pontine nuclei nTPM: 270.8
2454
Male, age 74, left hemisphere
413.5
2319
Female, age 91, both hemispheres
339.2
2109
Female, age 72, unknown
323.8
1863
Male, age 55, unknown
248.5
2115
Male, age 80, left hemisphere
243.9
1968
Male, age 76, left hemisphere
233.5
2727
Male, age 61, right hemisphere
210.1
2787
Female, age 85, both hemispheres
154.0
Pontine raphe nucleus nTPM: 154.3
2122
Female, age 85, midline
159.6
2853
Male, age 76, midline
149.0
Posteroventral cochlear nucleus nTPM: 309.6
2341
Male, age 80, both hemispheres
440.2
2135
Female, age 91, both hemispheres
363.9
2070
Male, age 76, both hemispheres
288.0
2371
Male, age 61, both hemispheres
257.9
2752
Female, age 85, both hemispheres
197.8
Principal sensory trigeminal nucleus nTPM: 244.6
2367
Female, age 91, left hemisphere
353.2
2324
Male, age 76, both hemispheres
234.1
2008
Male, age 80, left hemisphere
203.2
2158
Male, age 61, both hemispheres
188.1
Reticular pontine nucleus, caudal nTPM: 291.1
2457
Female, age 91, both hemispheres
346.7
2559
Male, age 74, both hemispheres
332.7
2092
Male, age 76, both hemispheres
286.0
2332
Male, age 80, right hemisphere
198.9
Reticular pontine nucleus, oral nTPM: 292.1
2366
Female, age 91, both hemispheres
337.5
2361
Male, age 74, both hemispheres
325.9
1939
Male, age 80, both hemispheres
288.4
2167
Male, age 76, both hemispheres
255.6
2012
Female, age 85, both hemispheres
253.2
Reticulotegmental nucleus nTPM: 233.2
2322
Female, age 91, both hemispheres
323.9
2333
Male, age 80, both hemispheres
249.2
2452
Male, age 74, both hemispheres
215.3
2325
Male, age 76, both hemispheres
144.4
Spinal trigeminal nucleus, oral nTPM: 224.3
2164
Male, age 80, both hemispheres
271.4
1978
Male, age 76, both hemispheres
232.6
2737
Female, age 85, both hemispheres
168.8
Subcoeruleus area nTPM: 246.6
2369
Female, age 85, left hemisphere
423.2
2089
Male, age 76, left hemisphere
243.0
1958
Male, age 80, both hemispheres
235.7
2323
Female, age 91, left hemisphere
173.1
2451
Male, age 74, both hemispheres
158.1
Superior olive nTPM: 291.3
2020
Male, age 76, both hemispheres
326.1
2364
Male, age 74, right hemisphere
315.9
2329
Male, age 80, right hemisphere
313.1
2561
Female, age 91, both hemispheres
283.8
1875
Female, age 85, both hemispheres
217.4
Ventral periolivary nuclei nTPM: 245.6
2023
Male, age 76, both hemispheres
360.5
2165
Male, age 80, both hemispheres
249.7
2794
Female, age 91, left hemisphere
211.2
2130
Female, age 85, both hemispheres
161.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 282.8
2456
Female, age 91, both hemispheres
338.2
2359
Male, age 61, both hemispheres
307.6
2840
Female, age 85, both hemispheres
271.3
1959
Male, age 76, both hemispheres
267.6
2161
Male, age 80, both hemispheres
267.3
2449
Male, age 74, both hemispheres
245.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
144.6
Pig sample
Sample description
nTPM
Pons nTPM: 144.6
Samples: 4
Max nTPM: 225.1
Min nTPM: 100.8
Sample A
Female
100.8
Sample B
Female
114.9
Sample C
Male
137.7
Sample D
Male
225.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
