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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:227.2 nTPM
HPA Brain:293.8 nTPM
GTEx:227.2 nTPM
FANTOM5:398.3 Scaled Tags Per Million
Pig:401.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 229.6
1981 Female, age 72, midline 291.7
2816 Male, age 47, midline 247.7
2048 Male, age 55, midline 245.6
2194 Female, age 79, both hemispheres 224.7
2565 Male, age 75, midline 138.5
Cervical spinal cord, dorsal horn
nTPM: 293.8
2296 Male, age 66, both hemispheres 573.5
2173 Female, age 72, unknown 405.3
2069 Male, age 47, both hemispheres 280.2
1877 Male, age 55, unknown 230.2
2721 Male, age 90, both hemispheres 143.9
2297 Male, age 75, both hemispheres 129.9
Cervical spinal cord, ventral horn
nTPM: 254.9
2068 Male, age 55, unknown 316.9
2098 Female, age 72, unknown 301.4
2820 Female, age 79, both hemispheres 256.6
2480 Male, age 75, both hemispheres 225.8
2295 Male, age 66, both hemispheres 217.3
2809 Male, age 90, both hemispheres 211.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

227.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 227.2
Samples: 159

Max nTPM: 560.5
Min nTPM: 32.9
Std nTPM: 103.9
Median nTPM: 216.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 560.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 478.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 456.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 445.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 426.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 422.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 414.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 414.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 411.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 399.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 398.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 387.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 381.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 380.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 378.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 377.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 371.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 369.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 368.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 359.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 347.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 346.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 341.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 341.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 340.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 339.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 335.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 329.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 326.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 322.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 319.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 318.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 317.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 313.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 313.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 312.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 311.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 308.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 306.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 297.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 296.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 295.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 290.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 290.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 289.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 287.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 286.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 283.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 280.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 279.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 278.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 277.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 276.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 274.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 271.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 268.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 267.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 264.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 259.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 259.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 254.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 253.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 250.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 249.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 244.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 240.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 237.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 230.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 229.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 228.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 226.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 225.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 224.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 224.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 224.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 221.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 218.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 218.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 217.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 216.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 216.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 215.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 213.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 212.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 209.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 208.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 206.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 199.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 199.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 197.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 193.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 191.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 189.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 189.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 189.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 186.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 186.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 185.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 185.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 184.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 181.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 180.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 178.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 175.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 174.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 174.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 172.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 170.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 168.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 163.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 161.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 161.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 159.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 157.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 157.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 156.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 154.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 151.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 150.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 147.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 144.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 142.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 141.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 139.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 139.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 136.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 134.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 133.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 130.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 129.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 123.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 122.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 118.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 117.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 114.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 114.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 113.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 111.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 110.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 106.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 99.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 97.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 97.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 96.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 95.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 94.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 93.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 90.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 90.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 86.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 84.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 65.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 65.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 63.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 56.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 53.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 38.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 36.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 32.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

398.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 398.3
FF:10181-103D1 60 years, female 472.3
FF:10159-103A6 76 years, female 324.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

401.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 348.5
Samples: 4

Max nTPM: 385.0
Min nTPM: 302.8
Sample A Female 326.5
Sample B Female 379.7
Sample C Male 302.8
Sample D Male 385.0
Ventral spinal cord
nTPM: 401.7
Samples: 4

Max nTPM: 530.2
Min nTPM: 298.7
Sample A Female 430.8
Sample B Female 347.1
Sample C Male 298.7
Sample D Male 530.2

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