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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:786.2 nTPM
HPA Brain:689.9 nTPM
GTEx:786.2 nTPM
FANTOM5:66.7 Scaled Tags Per Million
Pig:264.7 nTPM
Mouse:339.4 nTPM
Allen mouse:15.0 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

689.9
Sample id Sample description nTPM
Amygdala
nTPM: 674.7
2695 Female, age 67, right hemisphere 777.5
2514 Male, age 75, right hemisphere 691.4
2517 Female, age 94, left hemisphere 680.7
1987 Female, age 91, left hemisphere 624.1
2814 Male, age 76, right hemisphere 600.0
Basal amygdala
nTPM: 601.3
2609 Male, age 75, right hemisphere 733.6
2827 Female, age 67, right hemisphere 726.4
2685 Female, age 94, left hemisphere 603.6
2110 Male, age 80, left hemisphere 557.6
2243 Female, age 91, right hemisphere 526.2
1955 Male, age 76, both hemispheres 460.5
Central amygdala
nTPM: 669.9
2826 Female, age 94, left hemisphere 974.0
2515 Male, age 75, right hemisphere 803.2
2239 Male, age 80, left hemisphere 542.9
1905 Male, age 76, both hemispheres 524.8
2701 Female, age 91, right hemisphere 504.9
Corticomedial amygdala
nTPM: 599.7
2428 Male, age 75, right hemisphere 807.2
2829 Male, age 80, left hemisphere 639.8
2535 Female, age 67, right hemisphere 588.0
2242 Female, age 91, right hemisphere 575.4
2429 Female, age 94, left hemisphere 556.6
2240 Male, age 76, both hemispheres 431.1
Lateral amygdala
nTPM: 689.9
2830 Female, age 67, right hemisphere 859.8
2534 Female, age 94, left hemisphere 812.0
2516 Male, age 75, right hemisphere 792.3
2256 Male, age 80, left hemisphere 619.9
2255 Female, age 91, right hemisphere 551.1
1883 Male, age 76, both hemispheres 504.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

786.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 786.2
Samples: 152

Max nTPM: 1636.1
Min nTPM: 478.4
Std nTPM: 205.2
Median nTPM: 751.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1636.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1601.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1348.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1326.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1326.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1307.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1284.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1243.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1178.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1172.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1158.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1130.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1115.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1102.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1026.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1023.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1004.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 993.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 982.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 981.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 959.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 959.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 954.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 950.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 937.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 935.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 930.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 924.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 922.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 921.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 917.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 898.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 898.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 881.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 880.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 878.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 877.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 876.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 868.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 865.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 865.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 861.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 857.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 852.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 848.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 847.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 843.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 842.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 838.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 828.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 813.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 813.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 807.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 806.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 796.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 787.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 783.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 779.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 773.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 773.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 773.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 773.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 771.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 771.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 768.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 768.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 768.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 765.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 764.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 758.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 758.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 757.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 756.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 756.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 753.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 752.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 750.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 747.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 743.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 738.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 738.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 735.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 735.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 733.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 727.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 724.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 723.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 722.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 716.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 715.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 709.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 706.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 698.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 693.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 688.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 686.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 685.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 682.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 678.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 673.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 667.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 665.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 664.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 661.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 660.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 659.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 655.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 652.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 651.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 650.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 650.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 648.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 648.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 648.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 646.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 645.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 640.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 639.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 638.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 637.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 634.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 628.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 623.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 623.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 619.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 619.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 613.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 610.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 608.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 607.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 606.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 604.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 603.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 598.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 591.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 591.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 586.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 582.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 580.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 580.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 577.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 574.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 566.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 565.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 553.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 527.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 520.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 509.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 507.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 506.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 489.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 478.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

66.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 66.7
FF:10151-102I7 76 years, female 66.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.7
Pig sample Sample description nTPM
Amygdala
nTPM: 264.7
Samples: 4

Max nTPM: 351.2
Min nTPM: 219.8
Sample A Female 351.2
Sample B Female 256.2
Sample C Male 231.7
Sample D Male 219.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

339.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 339.4
Samples: 4

Max nTPM: 353.4
Min nTPM: 323.3
Sample A Male 344.2
Sample B Male 353.4
Sample C Female 323.3
Sample D Female 336.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.0
69818299 Antisense, RP_050510_04_G12, Mouse strain C57BL/6J (56 days, male) 15.8
74882810 Antisense, RP_060315_04_H02, Mouse strain C57BL/6J (56 days, male) 14.2

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