PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:954.4 nTPM
FANTOM5:579.5 Scaled Tags Per Million
Pig:1267.7 nTPM
Mouse:70.1 nTPM
Allen mouse:2.8 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 954.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 723.3
2301 Female, age 85, both hemispheres 1055.3
2188 Female, age 91, both hemispheres 839.0
2090 Male, age 80, both hemispheres 618.3
1984 Male, age 76, both hemispheres 380.7
Area postrema
nTPM: 483.1
2306 Male, age 80, both hemispheres 607.8
2799 Male, age 61, both hemispheres 515.2
2054 Male, age 76, both hemispheres 326.1
Dorsal cochlear nucleus
nTPM: 530.1
2187 Female, age 91, both hemispheres 720.8
2378 Male, age 80, both hemispheres 536.5
2802 Male, age 74, right hemisphere 531.8
2370 Male, age 61, both hemispheres 462.8
2058 Male, age 76, both hemispheres 398.6
Dorsal medullary reticular nucleus
nTPM: 560.5
2373 Male, age 61, both hemispheres 624.5
2040 Female, age 85, both hemispheres 540.2
2088 Male, age 76, both hemispheres 516.7
Dorsal motor vagal complex
nTPM: 427.7
2185 Male, age 76, both hemispheres 589.9
2797 Male, age 61, both hemispheres 587.9
2000 Male, age 74, unknown 421.7
2844 Male, age 55, unknown 392.7
2813 Female, age 72, unknown 373.7
2807 Female, age 85, both hemispheres 365.0
2643 Male, age 74, both hemispheres 352.6
2133 Female, age 91, both hemispheres 338.3
Dorsal tegmental nucleus
nTPM: 489.7
2083 Male, age 80, both hemispheres 673.1
2326 Male, age 74, both hemispheres 511.1
1936 Male, age 76, left hemisphere 440.9
2358 Male, age 61, both hemispheres 333.8
Dorsolateral tegmental area
nTPM: 524.0
2751 Female, age 85, both hemispheres 817.8
2654 Male, age 80, both hemispheres 662.7
2337 Male, age 61, both hemispheres 507.5
2360 Male, age 74, both hemispheres 323.0
2141 Male, age 76, both hemispheres 309.3
Gigantocellular reticular nuclei, medullary
nTPM: 621.9
2314 Male, age 61, both hemispheres 1062.7
2387 Female, age 91, both hemispheres 740.0
1876 Female, age 85, both hemispheres 656.2
2310 Male, age 80, both hemispheres 555.8
2022 Male, age 76, right hemisphere 409.0
2462 Male, age 74, both hemispheres 307.6
Gigantocellular reticular nuclei, pars
nTPM: 518.2
2336 Male, age 61, both hemispheres 595.3
2330 Male, age 80, both hemispheres 544.1
2706 Male, age 80, both hemispheres 531.5
2084 Female, age 85, both hemispheres 518.4
2168 Male, age 76, both hemispheres 401.6
Inferior olive
nTPM: 729.0
2178 Male, age 61, both hemispheres 819.2
2628 Female, age 91, both hemispheres 755.3
2085 Female, age 85, both hemispheres 740.6
2563 Male, age 74, both hemispheres 682.3
2379 Male, age 80, both hemispheres 647.9
Kolliker-Fuse nucleus
nTPM: 637.1
2793 Female, age 91, left hemisphere 920.3
2163 Male, age 80, both hemispheres 531.8
2315 Male, age 76, right hemisphere 459.4
Lateral lemniscal nuclei
nTPM: 508.6
2320 Female, age 91, left hemisphere 738.3
2746 Female, age 85, left hemisphere 497.0
2169 Male, age 76, both hemispheres 479.3
2036 Male, age 80, both hemispheres 433.7
2453 Male, age 74, right hemisphere 394.6
Lateral medullary reticular nucleus
nTPM: 739.7
2852 Male, age 80, both hemispheres 952.5
2305 Male, age 74, both hemispheres 832.7
2374 Male, age 61, both hemispheres 806.0
2190 Female, age 85, both hemispheres 684.8
2804 Female, age 91, both hemispheres 645.5
2044 Male, age 76, both hemispheres 516.5
Lateral parabrachial nucleus
nTPM: 581.8
2792 Male, age 76, both hemispheres 995.7
2013 Male, age 80, both hemispheres 551.5
2139 Female, age 85, right hemisphere 422.8
2790 Male, age 61, both hemispheres 357.1
Lateral vestibular nucleus
nTPM: 666.3
2311 Male, age 80, both hemispheres 784.7
2184 Male, age 76, both hemispheres 547.8
Locus coeruleus
nTPM: 306.9
2162 Male, age 80, both hemispheres 373.1
2720 Male, age 74, both hemispheres 371.5
2317 Female, age 72, unknown 359.6
2123 Female, age 91, both hemispheres 271.4
2014 Male, age 55, unknown 265.5
2788 Male, age 74, unknown 259.9
1980 Male, age 76, both hemispheres 247.7
Medial olivary nucleus
nTPM: 745.8
1943 Male, age 61, both hemispheres 847.5
1962 Male, age 76, both hemispheres 828.2
2851 Male, age 80, both hemispheres 743.1
2138 Female, age 91, both hemispheres 564.5
Medial parabrachial nucleus
nTPM: 644.0
2170 Female, age 91, both hemispheres 877.0
2463 Female, age 85, right hemisphere 741.7
2854 Male, age 80, both hemispheres 684.9
2786 Male, age 76, both hemispheres 539.9
2156 Male, age 61, both hemispheres 376.3
Medial periolivary nuclei
nTPM: 499.5
2458 Female, age 91, both hemispheres 597.3
2081 Male, age 80, both hemispheres 573.8
2791 Male, age 74, right hemisphere 571.1
2063 Male, age 76, both hemispheres 427.2
2171 Female, age 85, both hemispheres 328.3
Medial vestibular nucleus
nTPM: 572.5
2801 Male, age 74, both hemispheres 808.5
2803 Female, age 91, both hemispheres 675.4
2624 Male, age 61, both hemispheres 631.6
2093 Male, age 80, both hemispheres 577.3
2743 Female, age 85, both hemispheres 466.6
2134 Male, age 76, both hemispheres 275.4
Motor facial nucleus
nTPM: 547.9
2697 Female, age 85, both hemispheres 697.6
2126 Male, age 61, both hemispheres 659.0
2795 Female, age 91, both hemispheres 564.0
2365 Male, age 74, right hemisphere 563.9
2062 Male, age 76, both hemispheres 407.6
2327 Male, age 80, both hemispheres 395.5
Motor hypoglossal nucleus
nTPM: 541.1
2182 Male, age 80, both hemispheres 792.4
2125 Female, age 91, both hemispheres 645.0
2132 Female, age 85, both hemispheres 629.1
2461 Male, age 61, both hemispheres 387.3
2277 Male, age 76, both hemispheres 251.8
Motor trigeminal nucleus
nTPM: 511.4
2321 Female, age 91, both hemispheres 647.8
2560 Male, age 74, both hemispheres 546.4
2309 Male, age 76, both hemispheres 485.5
2335 Male, age 61, both hemispheres 451.0
2079 Male, age 80, both hemispheres 426.6
Nuclei of the trapezoid body
nTPM: 447.6
2166 Male, age 80, both hemispheres 586.6
2368 Female, age 91, both hemispheres 557.1
1983 Male, age 76, both hemispheres 417.2
2159 Male, age 61, both hemispheres 403.2
2735 Female, age 85, both hemispheres 274.1
Nucleus ambiguus
nTPM: 681.8
2071 Male, age 76, both hemispheres 845.8
2096 Female, age 85, both hemispheres 517.7
Nucleus cuneatus
nTPM: 645.6
2380 Male, age 80, both hemispheres 859.7
2808 Female, age 85, both hemispheres 835.6
2381 Male, age 80, both hemispheres 765.5
2376 Male, age 61, both hemispheres 665.4
2100 Male, age 76, both hemispheres 657.6
2564 Male, age 74, both hemispheres 565.2
2805 Female, age 91, both hemispheres 498.3
2562 Male, age 61, both hemispheres 493.9
2131 Male, age 76, both hemispheres 469.4
Nucleus gracilis
nTPM: 663.6
2382 Male, age 80, both hemispheres 855.0
2627 Male, age 74, both hemispheres 608.2
2299 Female, age 85, both hemispheres 527.6
Nucleus raphe magnus
nTPM: 412.1
2459 Female, age 91, both hemispheres 560.9
2328 Male, age 80, both hemispheres 515.8
2051 Male, age 76, both hemispheres 507.9
2455 Male, age 74, both hemispheres 424.1
2160 Male, age 61, both hemispheres 255.2
2172 Female, age 85, both hemispheres 208.9
Nucleus raphe obscurus
nTPM: 954.4
2845 Female, age 85, midline 1193.6
2800 Male, age 61, midline 851.9
2142 Male, age 76, midline 817.6
Nucleus raphe pallidus
nTPM: 724.1
2145 Male, age 76, midline 884.0
2183 Male, age 80, midline 647.8
1924 Male, age 61, midline 640.4
Nucleus tractus solitarii
nTPM: 250.9
2656 Male, age 76, both hemispheres 313.3
2307 Male, age 80, both hemispheres 262.2
2191 Female, age 85, both hemispheres 260.5
2144 Female, age 91, right hemisphere 167.7
Paramedian reticular nucleus
nTPM: 490.5
2057 Male, age 80, both hemispheres 538.7
2050 Female, age 85, both hemispheres 518.3
2052 Male, age 76, both hemispheres 457.7
2313 Male, age 61, both hemispheres 447.3
Parvicellular reticular nuclei
nTPM: 546.0
2119 Male, age 80, both hemispheres 644.5
2095 Male, age 76, both hemispheres 629.3
2558 Male, age 74, both hemispheres 364.2
Parvicellular reticular nuclei, medullary
nTPM: 469.8
2189 Female, age 91, both hemispheres 529.1
2181 Male, age 80, left hemisphere 450.6
2091 Female, age 85, both hemispheres 429.7
Pedunculopontine tegmental nucleus
nTPM: 458.3
2334 Male, age 80, both hemispheres 545.0
1921 Female, age 85, both hemispheres 428.7
2338 Male, age 61, both hemispheres 401.1
Peritrigeminal nucleus
nTPM: 606.0
2067 Female, age 85, both hemispheres 630.3
2136 Male, age 76, both hemispheres 622.0
2179 Male, age 61, both hemispheres 565.8
Pontine nuclei
nTPM: 528.5
2319 Female, age 91, both hemispheres 770.6
2454 Male, age 74, left hemisphere 716.6
2109 Female, age 72, unknown 656.1
1863 Male, age 55, unknown 515.3
1968 Male, age 76, left hemisphere 496.2
2115 Male, age 80, left hemisphere 487.1
2787 Female, age 85, both hemispheres 315.6
2727 Male, age 61, right hemisphere 270.0
Pontine raphe nucleus
nTPM: 390.9
2853 Male, age 76, midline 427.7
2122 Female, age 85, midline 354.1
Posteroventral cochlear nucleus
nTPM: 640.5
2135 Female, age 91, both hemispheres 882.9
2341 Male, age 80, both hemispheres 837.2
2070 Male, age 76, both hemispheres 537.8
2371 Male, age 61, both hemispheres 535.3
2752 Female, age 85, both hemispheres 409.2
Prepositus hypoglossal nucleus
nTPM: 609.5
2855 Female, age 85, right hemisphere 866.7
2086 Male, age 80, both hemispheres 352.4
Principal sensory trigeminal nucleus
nTPM: 489.4
2367 Female, age 91, left hemisphere 739.3
2324 Male, age 76, both hemispheres 538.3
2008 Male, age 80, left hemisphere 376.2
2158 Male, age 61, both hemispheres 303.7
Reticular pontine nucleus, caudal
nTPM: 569.8
2457 Female, age 91, both hemispheres 664.7
2559 Male, age 74, both hemispheres 657.2
2092 Male, age 76, both hemispheres 564.9
2332 Male, age 80, right hemisphere 392.4
Reticular pontine nucleus, oral
nTPM: 638.0
2366 Female, age 91, both hemispheres 805.7
2361 Male, age 74, both hemispheres 647.4
1939 Male, age 80, both hemispheres 636.9
2167 Male, age 76, both hemispheres 571.7
2012 Female, age 85, both hemispheres 528.5
Reticulotegmental nucleus
nTPM: 513.6
2322 Female, age 91, both hemispheres 661.5
2333 Male, age 80, both hemispheres 537.4
2452 Male, age 74, both hemispheres 489.8
2325 Male, age 76, both hemispheres 365.7
Spinal trigeminal nucleus, caudal
nTPM: 595.2
2312 Male, age 61, both hemispheres 753.5
2308 Male, age 80, both hemispheres 672.1
2447 Male, age 76, both hemispheres 582.2
2390 Female, age 91, both hemispheres 515.5
2642 Male, age 74, both hemispheres 452.8
Spinal trigeminal nucleus, interpolar
nTPM: 445.1
2389 Female, age 91, both hemispheres 515.4
2033 Male, age 80, both hemispheres 485.8
2386 Female, age 85, both hemispheres 452.3
2625 Male, age 61, both hemispheres 422.3
2066 Male, age 76, right hemisphere 349.5
Spinal trigeminal nucleus, oral
nTPM: 476.6
2164 Male, age 80, both hemispheres 571.8
1978 Male, age 76, both hemispheres 451.7
2737 Female, age 85, both hemispheres 406.4
Spinal vestibular nucleus
nTPM: 568.7
2806 Female, age 85, both hemispheres 696.7
2748 Male, age 76, both hemispheres 666.9
2186 Female, age 91, both hemispheres 533.8
2384 Male, age 74, both hemispheres 512.7
2780 Male, age 80, both hemispheres 512.3
2796 Male, age 61, both hemispheres 489.8
Subcoeruleus area
nTPM: 529.3
2369 Female, age 85, left hemisphere 861.8
1958 Male, age 80, both hemispheres 544.6
2089 Male, age 76, left hemisphere 485.0
2323 Female, age 91, left hemisphere 380.3
2451 Male, age 74, both hemispheres 374.6
Superior olive
nTPM: 556.2
2020 Male, age 76, both hemispheres 602.9
2364 Male, age 74, right hemisphere 592.8
2329 Male, age 80, right hemisphere 582.1
2561 Female, age 91, both hemispheres 574.3
1875 Female, age 85, both hemispheres 429.2
Superior vestibular nucleus
nTPM: 497.5
2015 Male, age 80, both hemispheres 582.3
2061 Male, age 76, both hemispheres 509.7
2383 Male, age 74, both hemispheres 400.6
Ventral medullary reticular nucleus
nTPM: 660.6
2372 Male, age 61, both hemispheres 738.4
2060 Male, age 76, both hemispheres 582.9
Ventral periolivary nuclei
nTPM: 469.9
2023 Male, age 76, both hemispheres 636.7
2165 Male, age 80, both hemispheres 482.5
2794 Female, age 91, left hemisphere 439.4
2130 Female, age 85, both hemispheres 321.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 611.1
2118 Male, age 80, both hemispheres 716.9
2180 Male, age 61, both hemispheres 679.9
2302 Female, age 91, both hemispheres 583.1
2741 Female, age 85, both hemispheres 544.8
1986 Male, age 76, both hemispheres 530.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 534.6
2456 Female, age 91, both hemispheres 649.2
2840 Female, age 85, both hemispheres 560.0
1959 Male, age 76, both hemispheres 541.0
2161 Male, age 80, both hemispheres 526.8
2359 Male, age 61, both hemispheres 477.3
2449 Male, age 74, both hemispheres 453.6

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 579.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 574.9
FF:10182-103D2 60 years, female 684.5
FF:10165-103B3 76 years, female 465.3
Medulla oblongata
Scaled Tags Per Million: 521.2
FF:10038-101F2 18-64 years, mixed 694.7
FF:10174-103C3 60 years, female 514.4
FF:10155-103A2 76 years, female 354.5
Pons
Scaled Tags Per Million: 579.5
FF:10033-101E6 18-54 years, mixed 579.5

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 1267.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 1267.7
Samples: 4

Max nTPM: 1705.4
Min nTPM: 710.5
Sample A Female 1315.6
Sample B Female 710.5
Sample C Male 1339.2
Sample D Male 1705.4
Pons
nTPM: 676.0
Samples: 4

Max nTPM: 1160.0
Min nTPM: 376.9
Sample A Female 524.4
Sample B Female 376.9
Sample C Male 642.8
Sample D Male 1160.0

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 70.1
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 70.1
Samples: 4

Max nTPM: 78.9
Min nTPM: 58.6
Sample A Male 70.6
Sample B Male 58.6
Sample C Female 78.9
Sample D Female 72.3

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 2.8
670 Antisense, RP_Baylor_102908, Mouse strain C57BL/6J (56 days, male) 2.8
671 Antisense, RP_Baylor_102908, Mouse strain C57BL/6J (56 days, male) 2.7
Pons
Expression energy: 2.3
671 Antisense, RP_Baylor_102908, Mouse strain C57BL/6J (56 days, male) 3.7
670 Antisense, RP_Baylor_102908, Mouse strain C57BL/6J (56 days, male) 3.2
672 Sense, RPS_Baylor_37014, Mouse strain C57BL/6J (56 days, male) 0.8

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