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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:65.2 nTPM
FANTOM5:28.7 Scaled Tags Per Million
Pig:21.8 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.2
Sample id Sample description nTPM
Area postrema
nTPM: 62.4
2799 Male, age 61, both hemispheres 75.3
2054 Male, age 76, both hemispheres 56.5
2306 Male, age 80, both hemispheres 55.6
Dorsal medullary reticular nucleus
nTPM: 59.9
2373 Male, age 61, both hemispheres 63.0
2088 Male, age 76, both hemispheres 58.8
2040 Female, age 85, both hemispheres 57.9
Dorsal motor vagal complex
nTPM: 54.1
2797 Male, age 61, both hemispheres 72.3
2643 Male, age 74, both hemispheres 58.0
2807 Female, age 85, both hemispheres 57.1
2185 Male, age 76, both hemispheres 52.5
2000 Male, age 74, unknown 49.6
2133 Female, age 91, both hemispheres 48.3
2813 Female, age 72, unknown 48.3
2844 Male, age 55, unknown 46.5
Gigantocellular reticular nuclei, medullary
nTPM: 56.7
2387 Female, age 91, both hemispheres 64.0
2314 Male, age 61, both hemispheres 62.6
1876 Female, age 85, both hemispheres 60.8
2022 Male, age 76, right hemisphere 56.8
2310 Male, age 80, both hemispheres 50.3
2462 Male, age 74, both hemispheres 45.7
Gigantocellular reticular nuclei, pars
nTPM: 53.7
2084 Female, age 85, both hemispheres 57.0
2706 Male, age 80, both hemispheres 56.5
2336 Male, age 61, both hemispheres 53.1
2168 Male, age 76, both hemispheres 51.7
2330 Male, age 80, both hemispheres 50.3
Inferior olive
nTPM: 57.4
2178 Male, age 61, both hemispheres 66.7
2379 Male, age 80, both hemispheres 60.7
2628 Female, age 91, both hemispheres 54.1
2563 Male, age 74, both hemispheres 53.1
2085 Female, age 85, both hemispheres 52.4
Lateral medullary reticular nucleus
nTPM: 57.5
2852 Male, age 80, both hemispheres 65.4
2804 Female, age 91, both hemispheres 58.6
2190 Female, age 85, both hemispheres 57.7
2374 Male, age 61, both hemispheres 55.6
2044 Male, age 76, both hemispheres 54.2
2305 Male, age 74, both hemispheres 53.3
Medial olivary nucleus
nTPM: 61.7
1943 Male, age 61, both hemispheres 75.2
2851 Male, age 80, both hemispheres 57.2
1962 Male, age 76, both hemispheres 57.1
2138 Female, age 91, both hemispheres 57.1
Medial vestibular nucleus
nTPM: 53.6
2803 Female, age 91, both hemispheres 64.8
2093 Male, age 80, both hemispheres 57.7
2801 Male, age 74, both hemispheres 51.7
2624 Male, age 61, both hemispheres 50.1
2743 Female, age 85, both hemispheres 49.2
2134 Male, age 76, both hemispheres 48.3
Motor hypoglossal nucleus
nTPM: 52.0
2132 Female, age 85, both hemispheres 59.8
2125 Female, age 91, both hemispheres 56.2
2182 Male, age 80, both hemispheres 54.7
2277 Male, age 76, both hemispheres 48.1
2461 Male, age 61, both hemispheres 41.5
Nucleus ambiguus
nTPM: 57.2
2071 Male, age 76, both hemispheres 58.2
2096 Female, age 85, both hemispheres 56.3
Nucleus cuneatus
nTPM: 62.5
2380 Male, age 80, both hemispheres 73.4
2805 Female, age 91, both hemispheres 72.3
2808 Female, age 85, both hemispheres 65.9
2381 Male, age 80, both hemispheres 65.3
2376 Male, age 61, both hemispheres 65.0
2564 Male, age 74, both hemispheres 60.4
2100 Male, age 76, both hemispheres 58.2
2562 Male, age 61, both hemispheres 53.2
2131 Male, age 76, both hemispheres 48.7
Nucleus gracilis
nTPM: 62.3
2382 Male, age 80, both hemispheres 76.2
2299 Female, age 85, both hemispheres 55.3
2627 Male, age 74, both hemispheres 55.3
Nucleus raphe obscurus
nTPM: 65.2
2800 Male, age 61, midline 71.1
2845 Female, age 85, midline 65.0
2142 Male, age 76, midline 59.5
Nucleus raphe pallidus
nTPM: 62.7
2145 Male, age 76, midline 67.8
1924 Male, age 61, midline 67.7
2183 Male, age 80, midline 52.6
Nucleus tractus solitarii
nTPM: 46.6
2656 Male, age 76, both hemispheres 54.3
2307 Male, age 80, both hemispheres 44.7
2191 Female, age 85, both hemispheres 44.4
2144 Female, age 91, right hemisphere 43.2
Parvicellular reticular nuclei
nTPM: 58.5
2095 Male, age 76, both hemispheres 60.9
2119 Male, age 80, both hemispheres 58.2
2558 Male, age 74, both hemispheres 56.3
Parvicellular reticular nuclei, medullary
nTPM: 52.1
2181 Male, age 80, left hemisphere 54.6
2189 Female, age 91, both hemispheres 51.8
2091 Female, age 85, both hemispheres 49.8
Peritrigeminal nucleus
nTPM: 53.2
2136 Male, age 76, both hemispheres 55.1
2179 Male, age 61, both hemispheres 54.6
2067 Female, age 85, both hemispheres 49.9
Prepositus hypoglossal nucleus
nTPM: 50.2
2855 Female, age 85, right hemisphere 56.0
2086 Male, age 80, both hemispheres 44.4
Spinal trigeminal nucleus, caudal
nTPM: 55.3
2312 Male, age 61, both hemispheres 59.9
2642 Male, age 74, both hemispheres 58.6
2308 Male, age 80, both hemispheres 55.1
2447 Male, age 76, both hemispheres 53.5
2390 Female, age 91, both hemispheres 49.6
Spinal trigeminal nucleus, interpolar
nTPM: 53.1
2033 Male, age 80, both hemispheres 56.5
2386 Female, age 85, both hemispheres 54.4
2389 Female, age 91, both hemispheres 54.3
2066 Male, age 76, right hemisphere 50.6
2625 Male, age 61, both hemispheres 49.7
Spinal vestibular nucleus
nTPM: 62.1
2384 Male, age 74, both hemispheres 78.6
2748 Male, age 76, both hemispheres 62.8
2806 Female, age 85, both hemispheres 62.7
2780 Male, age 80, both hemispheres 57.6
2186 Female, age 91, both hemispheres 57.3
2796 Male, age 61, both hemispheres 53.9
Superior vestibular nucleus
nTPM: 51.9
2015 Male, age 80, both hemispheres 53.8
2061 Male, age 76, both hemispheres 52.7
2383 Male, age 74, both hemispheres 49.3
Ventral medullary reticular nucleus
nTPM: 64.2
2372 Male, age 61, both hemispheres 64.6
2060 Male, age 76, both hemispheres 63.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 55.6
2118 Male, age 80, both hemispheres 62.5
1986 Male, age 76, both hemispheres 57.5
2180 Male, age 61, both hemispheres 56.2
2302 Female, age 91, both hemispheres 53.3
2741 Female, age 85, both hemispheres 48.3

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

28.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 28.7
FF:10038-101F2 18-64 years, mixed 30.5
FF:10174-103C3 60 years, female 28.0
FF:10155-103A2 76 years, female 27.6

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 21.8
Samples: 4

Max nTPM: 25.0
Min nTPM: 19.5
Sample A Female 21.3
Sample B Female 21.4
Sample C Male 25.0
Sample D Male 19.5

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