MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:100.2 nTPM
HPA Brain:66.3 nTPM
GTEx:100.2 nTPM
FANTOM5:38.5 Scaled Tags Per Million
Pig:24.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 66.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.3
2666 Male, age 74, left hemisphere 64.6
2411 Female, age 72, unknown 64.5
1870 Female, age 42, unknown 60.5
1833 Male, age 53, unknown 58.6
1830 Male, age 51, unknown 57.8
2828 Female, age 72, unknown 54.1
2019 Male, age 18, unknown 53.6
1827 Male, age 72, unknown 52.4
2219 Male, age 76, both hemispheres 50.2
2586 Male, age 75, left hemisphere 46.2
Dorsal raphe nucleus
nTPM: 52.6
2750 Male, age 76, both hemispheres 58.2
2016 Female, age 72, unknown 55.5
1828 Male, age 53, unknown 55.0
2047 Male, age 72, unknown 50.1
2298 Female, age 72, unknown 44.0
Inferior colliculus
nTPM: 51.9
2849 Male, age 72, unknown 56.3
1890 Male, age 53, unknown 54.5
1848 Female, age 42, unknown 52.4
2097 Female, age 72, unknown 44.6
Median raphe nucleus
nTPM: 50.5
2220 Male, age 76, midline 50.5
Periaquaductal grey, anterior
nTPM: 46.5
1947 Male, age 18, unknown 52.1
2502 Female, age 75, unknown 45.8
1795 Male, age 51, unknown 41.7
Periaquaductal grey, dorsal
nTPM: 48.7
2464 Female, age 72, unknown 53.5
1840 Male, age 53, unknown 52.2
2850 Male, age 76, both hemispheres 45.2
1831 Male, age 72, unknown 43.8
Periaquaductal grey, lateral
nTPM: 44.8
2053 Male, age 18, unknown 52.1
2140 Male, age 76, both hemispheres 44.4
2272 Male, age 74, both hemispheres 38.0
Pretectal area
nTPM: 46.9
2316 Male, age 76, right hemisphere 57.9
2825 Male, age 18, unknown 53.7
2407 Male, age 75, both hemispheres 53.4
1815 Male, age 53, unknown 50.7
2224 Female, age 72, unknown 46.5
1817 Female, age 42, unknown 44.7
2007 Male, age 72, unknown 44.2
2667 Female, age 75, unknown 42.4
1816 Male, age 51, unknown 41.2
2273 Male, age 74, both hemispheres 41.0
1944 Female, age 72, unknown 39.7
Red nucleus
nTPM: 66.3
2588 Male, age 74, left hemisphere 75.1
1904 Male, age 53, unknown 70.4
2823 Male, age 76, right hemisphere 70.4
2503 Female, age 72, unknown 70.1
1821 Female, age 72, unknown 69.1
1865 Male, age 51, unknown 67.9
2769 Male, age 72, unknown 67.9
2725 Female, age 75, unknown 66.8
1954 Female, age 42, unknown 65.9
2227 Male, age 72, unknown 65.0
2584 Male, age 75, left hemisphere 54.1
2785 Male, age 18, unknown 53.2
Substantia nigra
nTPM: 58.1
2409 Female, age 72, unknown 66.0
2241 Male, age 72, unknown 63.8
1851 Male, age 51, unknown 61.8
2699 Male, age 18, unknown 60.7
2590 Female, age 75, unknown 60.3
1916 Female, age 42, unknown 58.2
2665 Male, age 74, both hemispheres 56.7
2583 Male, age 75, right hemisphere 55.1
1889 Female, age 72, unknown 50.1
1941 Male, age 53, unknown 48.8
Superior colliculus
nTPM: 50.5
1895 Male, age 76, right hemisphere 60.1
2587 Male, age 74, left hemisphere 55.6
1995 Male, age 72, unknown 53.7
1839 Male, age 51, unknown 53.4
1913 Female, age 42, unknown 53.2
2668 Female, age 75, unknown 52.9
1796 Male, age 53, unknown 46.4
2087 Female, age 72, unknown 44.8
2664 Male, age 75, both hemispheres 44.2
2261 Male, age 18, unknown 40.7
Ventral tegmental area
nTPM: 55.2
1915 Female, age 42, unknown 61.1
2410 Female, age 72, unknown 59.2
1942 Male, age 51, unknown 57.1
2223 Female, age 72, unknown 54.7
2218 Male, age 76, both hemispheres 50.3
2021 Male, age 53, unknown 48.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 100.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.2
Samples: 139

Max nTPM: 244.0
Min nTPM: 29.2
Std nTPM: 34.9
Median nTPM: 89.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 244.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 213.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 208.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 207.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 188.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 186.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 163.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 156.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 153.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 152.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 151.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.3
Samples: 4

Max nTPM: 23.3
Min nTPM: 16.9
Sample A Female 23.3
Sample B Female 16.9
Sample C Male 19.4
Sample D Male 17.5
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 26.9
Min nTPM: 17.1
Sample A Female 25.3
Sample B Female 19.3
Sample C Male 26.9
Sample D Male 17.1
Periaqueductal gray
nTPM: 17.3
Samples: 3

Max nTPM: 18.7
Min nTPM: 15.6
Sample B Female 17.6
Sample C Male 18.7
Sample D Male 15.6
Superior colliculi
nTPM: 24.9
Samples: 4

Max nTPM: 35.4
Min nTPM: 20.1
Sample A Female 23.3
Sample B Female 20.8
Sample C Male 35.4
Sample D Male 20.1

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