MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:109.7 nTPM
HPA Brain:125.8 nTPM
GTEx:109.7 nTPM
FANTOM5:112.0 Scaled Tags Per Million
Pig:74.8 nTPM
Mouse:3.9 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 125.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.3
2586 Male, age 75, left hemisphere 194.5
2019 Male, age 18, unknown 129.4
2219 Male, age 76, both hemispheres 123.0
2828 Female, age 72, unknown 111.2
1827 Male, age 72, unknown 108.5
2411 Female, age 72, unknown 90.4
2666 Male, age 74, left hemisphere 86.3
1870 Female, age 42, unknown 82.8
1833 Male, age 53, unknown 82.2
1830 Male, age 51, unknown 74.4
Dorsal raphe nucleus
nTPM: 84.4
1828 Male, age 53, unknown 99.1
2298 Female, age 72, unknown 89.6
2750 Male, age 76, both hemispheres 80.6
2047 Male, age 72, unknown 77.0
2016 Female, age 72, unknown 75.7
Inferior colliculus
nTPM: 98.7
2097 Female, age 72, unknown 114.1
1890 Male, age 53, unknown 104.1
1848 Female, age 42, unknown 91.8
2849 Male, age 72, unknown 84.8
Median raphe nucleus
nTPM: 77.6
2220 Male, age 76, midline 77.6
Periaquaductal grey, anterior
nTPM: 125.8
2502 Female, age 75, unknown 150.0
1795 Male, age 51, unknown 128.9
1947 Male, age 18, unknown 98.5
Periaquaductal grey, dorsal
nTPM: 76.3
2464 Female, age 72, unknown 85.3
1840 Male, age 53, unknown 80.4
1831 Male, age 72, unknown 75.1
2850 Male, age 76, both hemispheres 64.5
Periaquaductal grey, lateral
nTPM: 68.1
2140 Male, age 76, both hemispheres 68.7
2272 Male, age 74, both hemispheres 67.9
2053 Male, age 18, unknown 67.6
Pretectal area
nTPM: 113.2
2007 Male, age 72, unknown 189.6
1816 Male, age 51, unknown 174.2
1817 Female, age 42, unknown 146.7
1944 Female, age 72, unknown 137.6
1815 Male, age 53, unknown 129.3
2667 Female, age 75, unknown 109.6
2825 Male, age 18, unknown 79.6
2224 Female, age 72, unknown 75.0
2316 Male, age 76, right hemisphere 71.5
2273 Male, age 74, both hemispheres 66.9
2407 Male, age 75, both hemispheres 65.3
Red nucleus
nTPM: 111.7
2588 Male, age 74, left hemisphere 154.6
2785 Male, age 18, unknown 140.6
2503 Female, age 72, unknown 128.4
2584 Male, age 75, left hemisphere 116.5
2769 Male, age 72, unknown 115.1
2227 Male, age 72, unknown 113.3
2725 Female, age 75, unknown 111.7
1954 Female, age 42, unknown 100.9
1904 Male, age 53, unknown 97.0
1821 Female, age 72, unknown 92.0
1865 Male, age 51, unknown 88.3
2823 Male, age 76, right hemisphere 82.0
Substantia nigra
nTPM: 122.2
1916 Female, age 42, unknown 169.5
2665 Male, age 74, both hemispheres 164.6
1851 Male, age 51, unknown 137.1
1889 Female, age 72, unknown 134.6
1941 Male, age 53, unknown 127.0
2583 Male, age 75, right hemisphere 114.3
2409 Female, age 72, unknown 106.2
2699 Male, age 18, unknown 103.1
2590 Female, age 75, unknown 83.0
2241 Male, age 72, unknown 82.5
Superior colliculus
nTPM: 103.9
2087 Female, age 72, unknown 142.0
2261 Male, age 18, unknown 123.7
1796 Male, age 53, unknown 122.6
2668 Female, age 75, unknown 114.1
2664 Male, age 75, both hemispheres 107.0
1913 Female, age 42, unknown 95.2
1995 Male, age 72, unknown 92.0
1839 Male, age 51, unknown 86.0
2587 Male, age 74, left hemisphere 81.7
1895 Male, age 76, right hemisphere 74.8
Ventral tegmental area
nTPM: 101.2
1915 Female, age 42, unknown 118.3
2218 Male, age 76, both hemispheres 114.1
2410 Female, age 72, unknown 106.5
1942 Male, age 51, unknown 103.3
2223 Female, age 72, unknown 97.0
2021 Male, age 53, unknown 68.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 109.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.7
Samples: 139

Max nTPM: 373.7
Min nTPM: 22.6
Std nTPM: 57.6
Median nTPM: 98.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 373.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 317.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 226.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 223.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 223.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 223.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 222.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 213.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 212.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 209.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 194.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 112.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.0
FF:10158-103A5 76 years, female 112.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 74.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.7
Samples: 4

Max nTPM: 77.8
Min nTPM: 47.4
Sample A Female 77.8
Sample B Female 47.4
Sample C Male 60.4
Sample D Male 49.1
Midbrain
nTPM: 65.9
Samples: 4

Max nTPM: 80.5
Min nTPM: 47.8
Sample A Female 47.8
Sample B Female 60.9
Sample C Male 74.4
Sample D Male 80.5
Periaqueductal gray
nTPM: 53.4
Samples: 3

Max nTPM: 61.1
Min nTPM: 44.1
Sample B Female 55.1
Sample C Male 61.1
Sample D Male 44.1
Superior colliculi
nTPM: 74.8
Samples: 4

Max nTPM: 97.6
Min nTPM: 50.3
Sample A Female 97.6
Sample B Female 50.3
Sample C Male 77.2
Sample D Male 74.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.9
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.6
Sample A Male 4.6
Sample B Male 3.9
Sample C Female 3.6
Sample D Female 3.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
71574362 Antisense, RP_050915_03_F02, Mouse strain C57BL/6J (56 days, male) 1.2

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