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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:671.2 nTPM
GTEx:671.2 nTPM
FANTOM5:11.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA011105Antibody CAB006268Antibody CAB040552
Squamous epithelial cells MediumHighHigh





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

671.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 671.2
Samples: 156

Max nTPM: 4184.8
Min nTPM: 0.3
Std nTPM: 718.6
Median nTPM: 526.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 4184.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 3072.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2429.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2379.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2336.6
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2328.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2237.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2175.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2157.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2007.3
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1904.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1868.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1738.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1687.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1648.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1587.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 1538.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1534.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1495.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1482.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1441.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1377.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1339.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1318.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1301.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1298.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1274.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1265.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1259.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1256.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1229.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1215.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1215.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1199.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1197.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1175.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1140.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1138.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1134.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1032.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1023.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 995.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 986.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 979.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 939.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 932.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 929.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 925.5
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 911.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 880.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 859.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 824.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 811.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 750.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 743.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 724.5
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 719.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 716.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 713.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 690.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 681.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 668.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 657.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 655.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 629.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 608.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 606.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 598.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 598.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 590.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 583.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 564.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 553.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 551.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 550.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 534.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 532.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 529.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 523.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 519.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 502.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 495.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 485.5
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 476.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 461.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 450.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 407.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 388.9
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 371.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 357.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 348.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 337.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 324.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 315.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 280.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 274.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 270.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 237.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 209.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 190.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 189.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 176.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 153.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 132.4
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 116.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 109.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 109.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 94.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 92.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 88.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 86.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 77.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 74.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 65.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 65.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 61.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 55.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 52.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 45.1
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 44.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 42.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 32.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 31.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 24.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 18.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 18.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 11.3
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 6.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 5.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 4.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 3.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 3.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2.4
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 2.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 0.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 0.9
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 0.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 0.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 0.5
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 0.4
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

11.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 11.9
FF:10204-103F6 68 years, female 11.9

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