PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		62.985
Mouse brain, Intensity
Ponsi 		20.316
RNA expressioni
HPA Brain:186.7 nTPM
FANTOM5:151.6 Scaled Tags Per Million
Pig:79.2 nTPM
Mouse:23.3 nTPM
Allen mouse:2.8 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody HPA057790
Medulla oblongata mean intensity 62.985
intensityi
FRONT BACK
Nucleus of the solitary tract 21.816
Raphe magnus nucleus 17.342
Cochlear nucleus 62.985
Lateral paragigantocellular nucleus 21.774
Raphe pallidus nucleus 16.361
Facial nucleus 18.913
Hypoglossal nucleus 17.446
Ambiguus nucleus 20.804
External cuneate nucleus 15.055
Inferior olivary nucleus 19.464
Raphe obscures nucleus 18.504
Dorsal motor nucleus of vagus 21.863
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 17.669
Parabrachial nucleus 18.921
Principle sensory trigeminal nucleus 20.316
Locus coeruleus 19.443
Pontine nucleus 18.263
Vestibular nucleus 16.675
Pontine reticular nucleus, oral 15.828
Lateral lemniscus 17.174
Superior paraolivary nucleus 19.391

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 186.7
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 149.0
2301 Female, age 85, both hemispheres 188.1
2090 Male, age 80, both hemispheres 148.5
2188 Female, age 91, both hemispheres 138.6
1984 Male, age 76, both hemispheres 120.9
Area postrema
nTPM: 122.8
2306 Male, age 80, both hemispheres 160.3
2799 Male, age 61, both hemispheres 133.3
2054 Male, age 76, both hemispheres 74.7
Dorsal cochlear nucleus
nTPM: 142.5
2802 Male, age 74, right hemisphere 177.3
2378 Male, age 80, both hemispheres 154.0
2187 Female, age 91, both hemispheres 152.8
2370 Male, age 61, both hemispheres 128.5
2058 Male, age 76, both hemispheres 100.1
Dorsal medullary reticular nucleus
nTPM: 131.8
2088 Male, age 76, both hemispheres 149.6
2373 Male, age 61, both hemispheres 147.8
2040 Female, age 85, both hemispheres 98.1
Dorsal motor vagal complex
nTPM: 127.2
2797 Male, age 61, both hemispheres 206.9
2185 Male, age 76, both hemispheres 152.4
2643 Male, age 74, both hemispheres 137.9
2844 Male, age 55, unknown 129.9
2807 Female, age 85, both hemispheres 105.5
2000 Male, age 74, unknown 105.3
2133 Female, age 91, both hemispheres 95.5
2813 Female, age 72, unknown 84.2
Dorsal tegmental nucleus
nTPM: 113.8
2083 Male, age 80, both hemispheres 139.9
2326 Male, age 74, both hemispheres 136.3
1936 Male, age 76, left hemisphere 102.2
2358 Male, age 61, both hemispheres 76.6
Dorsolateral tegmental area
nTPM: 108.4
2751 Female, age 85, both hemispheres 149.4
2654 Male, age 80, both hemispheres 132.7
2360 Male, age 74, both hemispheres 94.6
2337 Male, age 61, both hemispheres 92.9
2141 Male, age 76, both hemispheres 72.2
Gigantocellular reticular nuclei, medullary
nTPM: 141.2
2314 Male, age 61, both hemispheres 212.0
2387 Female, age 91, both hemispheres 181.1
2310 Male, age 80, both hemispheres 144.2
1876 Female, age 85, both hemispheres 111.3
2462 Male, age 74, both hemispheres 104.6
2022 Male, age 76, right hemisphere 94.2
Gigantocellular reticular nuclei, pars
nTPM: 124.5
2330 Male, age 80, both hemispheres 148.2
2706 Male, age 80, both hemispheres 140.5
2336 Male, age 61, both hemispheres 128.6
2084 Female, age 85, both hemispheres 106.0
2168 Male, age 76, both hemispheres 99.3
Inferior olive
nTPM: 168.6
2178 Male, age 61, both hemispheres 187.0
2379 Male, age 80, both hemispheres 183.0
2628 Female, age 91, both hemispheres 168.6
2085 Female, age 85, both hemispheres 160.2
2563 Male, age 74, both hemispheres 144.4
Kolliker-Fuse nucleus
nTPM: 119.4
2793 Female, age 91, left hemisphere 156.3
2163 Male, age 80, both hemispheres 123.2
2315 Male, age 76, right hemisphere 78.7
Lateral lemniscal nuclei
nTPM: 119.0
2320 Female, age 91, left hemisphere 147.4
2453 Male, age 74, right hemisphere 137.0
2169 Male, age 76, both hemispheres 111.2
2036 Male, age 80, both hemispheres 100.1
2746 Female, age 85, left hemisphere 99.5
Lateral medullary reticular nucleus
nTPM: 145.9
2374 Male, age 61, both hemispheres 173.4
2852 Male, age 80, both hemispheres 170.2
2804 Female, age 91, both hemispheres 141.7
2305 Male, age 74, both hemispheres 140.3
2190 Female, age 85, both hemispheres 127.2
2044 Male, age 76, both hemispheres 122.3
Lateral parabrachial nucleus
nTPM: 103.8
2792 Male, age 76, both hemispheres 133.2
2013 Male, age 80, both hemispheres 119.6
2790 Male, age 61, both hemispheres 83.5
2139 Female, age 85, right hemisphere 79.0
Lateral vestibular nucleus
nTPM: 148.0
2311 Male, age 80, both hemispheres 171.6
2184 Male, age 76, both hemispheres 124.4
Locus coeruleus
nTPM: 72.7
2720 Male, age 74, both hemispheres 92.6
2162 Male, age 80, both hemispheres 87.0
2317 Female, age 72, unknown 81.2
2123 Female, age 91, both hemispheres 71.4
2014 Male, age 55, unknown 62.8
2788 Male, age 74, unknown 61.5
1980 Male, age 76, both hemispheres 52.1
Medial olivary nucleus
nTPM: 149.2
1962 Male, age 76, both hemispheres 184.4
2138 Female, age 91, both hemispheres 146.7
2851 Male, age 80, both hemispheres 139.9
1943 Male, age 61, both hemispheres 126.0
Medial parabrachial nucleus
nTPM: 133.2
2170 Female, age 91, both hemispheres 180.9
2463 Female, age 85, right hemisphere 146.5
2854 Male, age 80, both hemispheres 130.8
2786 Male, age 76, both hemispheres 119.7
2156 Male, age 61, both hemispheres 88.4
Medial periolivary nuclei
nTPM: 121.7
2458 Female, age 91, both hemispheres 163.4
2081 Male, age 80, both hemispheres 139.5
2791 Male, age 74, right hemisphere 106.3
2063 Male, age 76, both hemispheres 99.8
2171 Female, age 85, both hemispheres 99.5
Medial vestibular nucleus
nTPM: 125.2
2801 Male, age 74, both hemispheres 155.2
2093 Male, age 80, both hemispheres 146.4
2624 Male, age 61, both hemispheres 140.4
2803 Female, age 91, both hemispheres 140.3
2743 Female, age 85, both hemispheres 102.3
2134 Male, age 76, both hemispheres 66.7
Motor facial nucleus
nTPM: 131.1
2795 Female, age 91, both hemispheres 190.9
2126 Male, age 61, both hemispheres 146.1
2365 Male, age 74, right hemisphere 117.8
2697 Female, age 85, both hemispheres 117.4
2327 Male, age 80, both hemispheres 114.3
2062 Male, age 76, both hemispheres 100.0
Motor hypoglossal nucleus
nTPM: 116.7
2182 Male, age 80, both hemispheres 165.2
2125 Female, age 91, both hemispheres 146.8
2132 Female, age 85, both hemispheres 115.0
2461 Male, age 61, both hemispheres 95.9
2277 Male, age 76, both hemispheres 60.7
Motor trigeminal nucleus
nTPM: 129.4
2321 Female, age 91, both hemispheres 176.2
2560 Male, age 74, both hemispheres 146.9
2079 Male, age 80, both hemispheres 108.9
2309 Male, age 76, both hemispheres 107.5
2335 Male, age 61, both hemispheres 107.2
Nuclei of the trapezoid body
nTPM: 117.1
2368 Female, age 91, both hemispheres 163.1
2166 Male, age 80, both hemispheres 143.5
2159 Male, age 61, both hemispheres 95.3
2735 Female, age 85, both hemispheres 92.1
1983 Male, age 76, both hemispheres 91.7
Nucleus ambiguus
nTPM: 141.9
2071 Male, age 76, both hemispheres 166.8
2096 Female, age 85, both hemispheres 117.0
Nucleus cuneatus
nTPM: 186.7
2805 Female, age 91, both hemispheres 240.2
2564 Male, age 74, both hemispheres 211.8
2100 Male, age 76, both hemispheres 208.0
2380 Male, age 80, both hemispheres 200.1
2381 Male, age 80, both hemispheres 182.2
2131 Male, age 76, both hemispheres 168.1
2376 Male, age 61, both hemispheres 166.3
2808 Female, age 85, both hemispheres 160.2
2562 Male, age 61, both hemispheres 143.3
Nucleus gracilis
nTPM: 181.8
2382 Male, age 80, both hemispheres 197.8
2299 Female, age 85, both hemispheres 188.9
2627 Male, age 74, both hemispheres 158.8
Nucleus raphe magnus
nTPM: 111.8
2459 Female, age 91, both hemispheres 158.1
2328 Male, age 80, both hemispheres 121.9
2051 Male, age 76, both hemispheres 120.2
2455 Male, age 74, both hemispheres 106.3
2172 Female, age 85, both hemispheres 86.4
2160 Male, age 61, both hemispheres 78.1
Nucleus raphe obscurus
nTPM: 178.6
2142 Male, age 76, midline 190.3
2800 Male, age 61, midline 177.0
2845 Female, age 85, midline 168.7
Nucleus raphe pallidus
nTPM: 145.5
2145 Male, age 76, midline 221.5
2183 Male, age 80, midline 121.9
1924 Male, age 61, midline 93.0
Nucleus tractus solitarii
nTPM: 76.9
2307 Male, age 80, both hemispheres 87.9
2191 Female, age 85, both hemispheres 87.3
2656 Male, age 76, both hemispheres 73.8
2144 Female, age 91, right hemisphere 58.5
Paramedian reticular nucleus
nTPM: 108.8
2057 Male, age 80, both hemispheres 121.9
2052 Male, age 76, both hemispheres 119.0
2050 Female, age 85, both hemispheres 101.8
2313 Male, age 61, both hemispheres 92.3
Parvicellular reticular nuclei
nTPM: 148.0
2095 Male, age 76, both hemispheres 168.6
2558 Male, age 74, both hemispheres 141.0
2119 Male, age 80, both hemispheres 134.3
Parvicellular reticular nuclei, medullary
nTPM: 108.6
2189 Female, age 91, both hemispheres 114.3
2181 Male, age 80, left hemisphere 106.4
2091 Female, age 85, both hemispheres 105.2
Pedunculopontine tegmental nucleus
nTPM: 93.6
2334 Male, age 80, both hemispheres 107.5
1921 Female, age 85, both hemispheres 90.9
2338 Male, age 61, both hemispheres 82.4
Peritrigeminal nucleus
nTPM: 118.6
2136 Male, age 76, both hemispheres 142.5
2067 Female, age 85, both hemispheres 107.4
2179 Male, age 61, both hemispheres 105.9
Pontine nuclei
nTPM: 120.6
2319 Female, age 91, both hemispheres 146.2
2454 Male, age 74, left hemisphere 133.8
2115 Male, age 80, left hemisphere 130.1
2109 Female, age 72, unknown 127.2
1968 Male, age 76, left hemisphere 125.8
1863 Male, age 55, unknown 124.0
2787 Female, age 85, both hemispheres 95.2
2727 Male, age 61, right hemisphere 82.8
Pontine raphe nucleus
nTPM: 86.4
2122 Female, age 85, midline 91.3
2853 Male, age 76, midline 81.6
Posteroventral cochlear nucleus
nTPM: 130.6
2341 Male, age 80, both hemispheres 175.4
2371 Male, age 61, both hemispheres 141.5
2135 Female, age 91, both hemispheres 129.7
2070 Male, age 76, both hemispheres 116.2
2752 Female, age 85, both hemispheres 90.3
Prepositus hypoglossal nucleus
nTPM: 128.4
2855 Female, age 85, right hemisphere 156.5
2086 Male, age 80, both hemispheres 100.3
Principal sensory trigeminal nucleus
nTPM: 115.9
2367 Female, age 91, left hemisphere 158.3
2324 Male, age 76, both hemispheres 119.0
2008 Male, age 80, left hemisphere 97.7
2158 Male, age 61, both hemispheres 88.4
Reticular pontine nucleus, caudal
nTPM: 139.2
2457 Female, age 91, both hemispheres 175.7
2559 Male, age 74, both hemispheres 149.5
2332 Male, age 80, right hemisphere 124.5
2092 Male, age 76, both hemispheres 107.3
Reticular pontine nucleus, oral
nTPM: 127.1
2361 Male, age 74, both hemispheres 142.2
2366 Female, age 91, both hemispheres 140.9
1939 Male, age 80, both hemispheres 127.3
2167 Male, age 76, both hemispheres 118.5
2012 Female, age 85, both hemispheres 106.5
Reticulotegmental nucleus
nTPM: 149.7
2322 Female, age 91, both hemispheres 203.7
2452 Male, age 74, both hemispheres 158.2
2333 Male, age 80, both hemispheres 145.7
2325 Male, age 76, both hemispheres 91.2
Spinal trigeminal nucleus, caudal
nTPM: 144.6
2447 Male, age 76, both hemispheres 189.6
2308 Male, age 80, both hemispheres 154.4
2312 Male, age 61, both hemispheres 133.0
2390 Female, age 91, both hemispheres 127.2
2642 Male, age 74, both hemispheres 118.9
Spinal trigeminal nucleus, interpolar
nTPM: 107.2
2389 Female, age 91, both hemispheres 123.1
2625 Male, age 61, both hemispheres 110.9
2033 Male, age 80, both hemispheres 108.7
2386 Female, age 85, both hemispheres 98.3
2066 Male, age 76, right hemisphere 94.9
Spinal trigeminal nucleus, oral
nTPM: 121.1
2164 Male, age 80, both hemispheres 156.0
1978 Male, age 76, both hemispheres 111.8
2737 Female, age 85, both hemispheres 95.3
Spinal vestibular nucleus
nTPM: 130.3
2384 Male, age 74, both hemispheres 158.5
2748 Male, age 76, both hemispheres 145.5
2806 Female, age 85, both hemispheres 128.4
2186 Female, age 91, both hemispheres 119.8
2796 Male, age 61, both hemispheres 115.7
2780 Male, age 80, both hemispheres 113.9
Subcoeruleus area
nTPM: 122.1
2369 Female, age 85, left hemisphere 162.8
2451 Male, age 74, both hemispheres 125.8
2089 Male, age 76, left hemisphere 123.3
1958 Male, age 80, both hemispheres 109.2
2323 Female, age 91, left hemisphere 89.5
Superior olive
nTPM: 125.2
2561 Female, age 91, both hemispheres 163.2
2329 Male, age 80, right hemisphere 138.4
2020 Male, age 76, both hemispheres 126.3
2364 Male, age 74, right hemisphere 107.5
1875 Female, age 85, both hemispheres 90.6
Superior vestibular nucleus
nTPM: 111.2
2015 Male, age 80, both hemispheres 126.2
2061 Male, age 76, both hemispheres 109.9
2383 Male, age 74, both hemispheres 97.5
Ventral medullary reticular nucleus
nTPM: 161.4
2372 Male, age 61, both hemispheres 182.9
2060 Male, age 76, both hemispheres 139.9
Ventral periolivary nuclei
nTPM: 113.8
2794 Female, age 91, left hemisphere 131.5
2165 Male, age 80, both hemispheres 123.2
2023 Male, age 76, both hemispheres 110.4
2130 Female, age 85, both hemispheres 90.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 137.5
2118 Male, age 80, both hemispheres 164.7
2302 Female, age 91, both hemispheres 153.6
2180 Male, age 61, both hemispheres 136.5
1986 Male, age 76, both hemispheres 128.5
2741 Female, age 85, both hemispheres 104.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 123.9
2456 Female, age 91, both hemispheres 185.5
2161 Male, age 80, both hemispheres 127.2
2449 Male, age 74, both hemispheres 117.9
2840 Female, age 85, both hemispheres 111.5
1959 Male, age 76, both hemispheres 106.7
2359 Male, age 61, both hemispheres 94.3

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 151.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 130.1
FF:10182-103D2 60 years, female 161.0
FF:10165-103B3 76 years, female 99.3
Medulla oblongata
Scaled Tags Per Million: 122.8
FF:10038-101F2 18-64 years, mixed 183.4
FF:10174-103C3 60 years, female 112.7
FF:10155-103A2 76 years, female 72.2
Pons
Scaled Tags Per Million: 151.6
FF:10033-101E6 18-54 years, mixed 151.6

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 79.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 79.2
Samples: 4

Max nTPM: 94.0
Min nTPM: 64.3
Sample A Female 71.3
Sample B Female 64.3
Sample C Male 87.2
Sample D Male 94.0
Pons
nTPM: 59.2
Samples: 4

Max nTPM: 79.0
Min nTPM: 45.2
Sample A Female 53.2
Sample B Female 45.2
Sample C Male 59.5
Sample D Male 79.0

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 23.3
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 23.3
Samples: 4

Max nTPM: 24.7
Min nTPM: 22.5
Sample A Male 22.5
Sample B Male 22.5
Sample C Female 23.5
Sample D Female 24.7

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 2.8
1735 Antisense, RP_040507_02_H04, Mouse strain C57BL/6J (56 days, male) 4.5
77371857 Antisense, RP_070129_01_B10, Mouse strain C57BL/6J (56 days, male) 1.1
1734 Antisense, RP_040507_02_H04, Mouse strain C57BL/6J (56 days, male) 0.3
Pons
Expression energy: 2.6
1735 Antisense, RP_040507_02_H04, Mouse strain C57BL/6J (56 days, male) 4.0
77371857 Antisense, RP_070129_01_B10, Mouse strain C57BL/6J (56 days, male) 1.3
1734 Antisense, RP_040507_02_H04, Mouse strain C57BL/6J (56 days, male) 0.3

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