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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

122.270
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:306.6 nTPM
FANTOM5:157.2 Scaled Tags Per Million
Pig:64.7 nTPM
Mouse:124.4 nTPM
Allen mouse:4.5 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA057790
Thalamus mean intensity 122.270
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Medial geniculate nucleus 14.336
Parafascicular thalamic nucleus 13.570
Pregeniculate nucleus -
Stria terminalis 122.270
Zona incerta 14.248
Anterodorsal thalamic nucleus 24.495
Reticular thalamic nucleus 15.977
Vental anterior thalamic nucleus -
Medial habenular nucleus 20.146
Laterodorsal thalamic area 24.410
Paraventricular thalamic nucleus 28.564
Central medial thalamic area 18.431
Ventral lateral thalamic area -
Ventral medial thalamic area 12.462
Lateral habenulal nucleus 17.151
Ventral posterior thalamus 13.908
Anterior pretactal nucleus 19.757
Retromammillary nucleus 15.995

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

306.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 120.2
2032 Female, age 42, unknown 159.5
2497 Male, age 66, unknown 119.4
2396 Male, age 61, right hemisphere 81.7
Centromedial thalamic nucleus
nTPM: 306.6
2279 Female, age 85, left hemisphere 428.7
2401 Male, age 76, right hemisphere 184.5
Habenula
nTPM: 106.1
2276 Male, age 66, unknown 128.1
2203 Male, age 61, left hemisphere 101.2
1957 Male, age 80, both hemispheres 98.1
2252 Male, age 62, unknown 97.2
Lateral geniculate body
nTPM: 156.7
2857 Male, age 74, right hemisphere 175.5
2035 Female, age 72, unknown 171.3
2575 Female, age 94, right hemisphere 168.0
2841 Male, age 80, both hemispheres 164.8
2659 Male, age 66, unknown 161.6
2106 Female, age 67, right hemisphere 143.7
2399 Male, age 61, left hemisphere 143.4
1953 Male, age 62, unknown 125.5
Lateral thalamic nuclei
nTPM: 150.4
2661 Female, age 72, unknown 191.7
2577 Male, age 74, both hemispheres 162.0
2573 Female, age 94, left hemisphere 138.7
2765 Female, age 67, both hemispheres 131.4
1903 Male, age 76, left hemisphere 128.3
Medial dorsal thalamic nucleus
nTPM: 132.5
1859 Male, age 76, both hemispheres 175.0
2660 Female, age 72, unknown 171.1
2492 Male, age 75, right hemisphere 162.1
2572 Female, age 94, right hemisphere 149.9
2576 Male, age 74, both hemispheres 149.4
1810 Male, age 48, unknown 138.2
2283 Male, age 80, right hemisphere 130.3
2498 Male, age 66, unknown 120.7
2026 Male, age 62, unknown 119.4
2402 Female, age 67, both hemispheres 115.8
1930 Female, age 42, unknown 108.6
1971 Male, age 61, right hemisphere 93.9
2039 Female, age 72, unknown 87.2
Medial geniculate body
nTPM: 151.1
2571 Male, age 75, right hemisphere 213.7
1811 Female, age 42, unknown 163.1
2657 Male, age 74, right hemisphere 159.6
2650 Female, age 94, left hemisphere 155.1
2207 Male, age 80, right hemisphere 150.1
2217 Female, age 72, unknown 141.3
2049 Male, age 76, both hemispheres 74.7
Nucleus reuniens
nTPM: 129.2
2210 Female, age 85, left hemisphere 205.0
2205 Male, age 80, left hemisphere 116.5
2212 Female, age 67, left hemisphere 66.0
Nucleus rhomboideus
nTPM: 143.4
2280 Female, age 85, left hemisphere 232.8
2206 Male, age 80, both hemispheres 123.0
2213 Female, age 67, left hemisphere 74.3
Posterior thalamic nucleus
nTPM: 149.0
2266 Male, age 76, right hemisphere 188.7
2655 Male, age 74, right hemisphere 176.5
2649 Female, age 94, both hemispheres 120.0
2495 Female, age 67, right hemisphere 110.7
Pulvinar
nTPM: 145.0
2582 Female, age 72, unknown 168.8
2724 Male, age 74, right hemisphere 168.5
1899 Female, age 42, unknown 154.5
1972 Male, age 62, unknown 147.0
2398 Male, age 61, left hemisphere 143.7
1932 Male, age 80, right hemisphere 143.2
2214 Male, age 76, right hemisphere 143.2
1929 Male, age 48, unknown 137.0
2499 Male, age 66, unknown 124.7
2496 Female, age 67, right hemisphere 119.9
Subthalamic nucleus
nTPM: 129.4
2658 Male, age 74, both hemispheres 166.8
2124 Male, age 62, unknown 151.4
2056 Female, age 72, unknown 145.2
2282 Male, age 61, both hemispheres 138.4
2275 Male, age 66, unknown 133.4
2216 Male, age 48, unknown 125.8
2779 Female, age 42, unknown 101.5
2406 Female, age 72, unknown 72.4
Ventral posterolateral thalamic nucleus
nTPM: 182.1
2581 Female, age 72, unknown 236.7
2740 Male, age 76, right hemisphere 233.4
2570 Male, age 75, right hemisphere 214.6
2578 Male, age 74, both hemispheres 176.3
2197 Male, age 80, both hemispheres 125.2
2397 Male, age 61, right hemisphere 106.4
Ventral posteromedial thalamic nucleus
nTPM: 155.8
2281 Male, age 75, right hemisphere 196.6
2653 Male, age 74, both hemispheres 175.0
2758 Male, age 80, both hemispheres 146.9
2127 Male, age 76, right hemisphere 142.3
2202 Male, age 61, left hemisphere 118.2
Ventral thalamic nuclei
nTPM: 156.8
2858 Female, age 72, unknown 262.9
1860 Male, age 76, both hemispheres 182.4
2652 Male, age 74, left hemisphere 157.4
1845 Male, age 48, unknown 150.4
2580 Male, age 66, unknown 149.1
2291 Female, age 72, unknown 133.5
2285 Male, age 62, unknown 130.9
2204 Male, age 80, both hemispheres 130.3
1912 Female, age 42, unknown 114.7
Zona incerta
nTPM: 127.2
2822 Male, age 74, right hemisphere 169.1
2663 Female, age 72, unknown 144.3
2208 Male, age 80, right hemisphere 112.1
2403 Male, age 62, unknown 105.4
2215 Male, age 66, unknown 105.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

157.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 157.2
FF:10154-103A1 76 years, female 157.2

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.7
Pig sample Sample description nTPM
Thalamus
nTPM: 64.7
Samples: 4

Max nTPM: 86.6
Min nTPM: 52.7
Sample A Female 52.7
Sample B Female 53.8
Sample C Male 65.5
Sample D Male 86.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 124.4
Samples: 4

Max nTPM: 220.6
Min nTPM: 40.2
Sample A Male 140.2
Sample B Male 40.2
Sample C Female 220.6
Sample D Female 96.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.5
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 4.5
1735 Antisense, RP_040507_02_H04, Mouse strain C57BL/6J (56 days, male) 6.0
77371857 Antisense, RP_070129_01_B10, Mouse strain C57BL/6J (56 days, male) 3.1
1734 Antisense, RP_040507_02_H04, Mouse strain C57BL/6J (56 days, male) 0.2

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