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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:212.3 nTPM
HPA Brain:269.8 nTPM
GTEx:212.3 nTPM
FANTOM5:865.1 Scaled Tags Per Million
Pig:268.6 nTPM
Mouse:332.4 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.8
Sample id Sample description nTPM
Amygdala
nTPM: 157.4
1987 Female, age 91, left hemisphere 218.4
2517 Female, age 94, left hemisphere 190.3
2814 Male, age 76, right hemisphere 164.8
2514 Male, age 75, right hemisphere 140.0
2695 Female, age 67, right hemisphere 73.6
Basal amygdala
nTPM: 218.6
2243 Female, age 91, right hemisphere 342.3
2685 Female, age 94, left hemisphere 243.8
2827 Female, age 67, right hemisphere 204.2
2110 Male, age 80, left hemisphere 203.0
1955 Male, age 76, both hemispheres 200.7
2609 Male, age 75, right hemisphere 117.7
Central amygdala
nTPM: 205.2
2239 Male, age 80, left hemisphere 292.4
2826 Female, age 94, left hemisphere 275.6
2701 Female, age 91, right hemisphere 199.9
1905 Male, age 76, both hemispheres 160.1
2515 Male, age 75, right hemisphere 97.8
Corticomedial amygdala
nTPM: 269.8
2535 Female, age 67, right hemisphere 412.2
2242 Female, age 91, right hemisphere 374.7
2429 Female, age 94, left hemisphere 267.2
2829 Male, age 80, left hemisphere 256.3
2240 Male, age 76, both hemispheres 194.1
2428 Male, age 75, right hemisphere 114.3
Lateral amygdala
nTPM: 194.8
2534 Female, age 94, left hemisphere 403.7
2256 Male, age 80, left hemisphere 202.0
1883 Male, age 76, both hemispheres 196.3
2255 Female, age 91, right hemisphere 188.0
2830 Female, age 67, right hemisphere 94.8
2516 Male, age 75, right hemisphere 84.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 212.3
Samples: 152

Max nTPM: 640.8
Min nTPM: 29.2
Std nTPM: 116.1
Median nTPM: 186.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 640.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 535.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 530.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 520.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 487.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 474.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 466.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 429.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 420.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 420.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 404.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 395.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 392.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 384.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 380.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 380.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 368.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 355.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 345.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 333.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 332.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 330.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 330.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 325.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 324.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 321.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 320.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 320.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 317.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 316.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 315.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 309.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 304.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 293.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 290.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 285.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 282.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 281.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 279.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 275.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 271.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 269.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 267.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 264.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 263.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 262.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 261.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 248.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 247.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 243.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 242.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 241.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 238.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 238.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 235.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 234.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 233.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 230.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 227.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 226.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 225.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 223.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 222.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 215.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 211.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 208.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 203.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 199.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 198.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 196.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 196.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 194.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 192.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 189.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 188.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 188.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 185.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 180.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 177.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 177.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 173.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 173.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 172.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 172.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 171.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 169.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 169.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 168.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 167.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 164.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 163.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 162.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 161.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 159.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 155.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 155.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 153.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 152.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 149.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 144.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 138.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 137.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 137.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 136.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 133.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 133.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 132.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 131.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 131.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 130.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 129.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 129.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 128.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 127.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 125.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 124.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 122.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 117.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 117.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 114.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 113.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 112.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 110.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 109.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 107.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 106.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 104.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 104.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 103.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 103.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 99.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 98.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 95.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 93.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 90.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 90.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 88.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 87.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 82.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 82.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 79.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 77.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 70.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 69.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 68.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 66.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 64.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 53.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 50.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 39.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 38.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 29.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

865.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 865.1
FF:10151-102I7 76 years, female 865.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.6
Pig sample Sample description nTPM
Amygdala
nTPM: 268.6
Samples: 4

Max nTPM: 429.8
Min nTPM: 174.1
Sample A Female 429.8
Sample B Female 174.1
Sample C Male 232.8
Sample D Male 237.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

332.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 332.5
Samples: 4

Max nTPM: 380.4
Min nTPM: 310.0
Sample A Male 319.9
Sample B Male 319.5
Sample C Female 380.4
Sample D Female 310.0

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