MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.2 nTPM
HPA Brain:31.9 nTPM
GTEx:38.2 nTPM
FANTOM5:33.6 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:29.7 nTPM
Allen mouse:8.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.8
2411 Female, age 72, unknown 34.3
2019 Male, age 18, unknown 30.1
1870 Female, age 42, unknown 29.2
1827 Male, age 72, unknown 27.7
1833 Male, age 53, unknown 27.0
2219 Male, age 76, both hemispheres 26.0
2828 Female, age 72, unknown 25.6
1830 Male, age 51, unknown 25.2
2586 Male, age 75, left hemisphere 24.4
2666 Male, age 74, left hemisphere 18.8
Dorsal raphe nucleus
nTPM: 30.1
2298 Female, age 72, unknown 39.5
2047 Male, age 72, unknown 29.8
2750 Male, age 76, both hemispheres 28.0
1828 Male, age 53, unknown 27.0
2016 Female, age 72, unknown 26.4
Inferior colliculus
nTPM: 30.0
2097 Female, age 72, unknown 36.0
1848 Female, age 42, unknown 29.6
1890 Male, age 53, unknown 28.1
2849 Male, age 72, unknown 26.2
Median raphe nucleus
nTPM: 31.9
2220 Male, age 76, midline 31.9
Periaquaductal grey, anterior
nTPM: 29.2
2502 Female, age 75, unknown 32.4
1947 Male, age 18, unknown 27.7
1795 Male, age 51, unknown 27.6
Periaquaductal grey, dorsal
nTPM: 25.4
1840 Male, age 53, unknown 29.4
2464 Female, age 72, unknown 25.5
1831 Male, age 72, unknown 24.6
2850 Male, age 76, both hemispheres 22.1
Periaquaductal grey, lateral
nTPM: 29.4
2272 Male, age 74, both hemispheres 35.9
2053 Male, age 18, unknown 27.3
2140 Male, age 76, both hemispheres 24.9
Pretectal area
nTPM: 30.2
2273 Male, age 74, both hemispheres 36.8
2224 Female, age 72, unknown 35.2
1817 Female, age 42, unknown 33.4
2007 Male, age 72, unknown 33.1
2667 Female, age 75, unknown 30.6
1816 Male, age 51, unknown 30.2
1944 Female, age 72, unknown 29.0
2316 Male, age 76, right hemisphere 28.0
2825 Male, age 18, unknown 26.3
1815 Male, age 53, unknown 26.2
2407 Male, age 75, both hemispheres 23.3
Red nucleus
nTPM: 28.0
2503 Female, age 72, unknown 33.3
2785 Male, age 18, unknown 33.1
1821 Female, age 72, unknown 31.5
2725 Female, age 75, unknown 28.9
2769 Male, age 72, unknown 28.9
2227 Male, age 72, unknown 27.6
1954 Female, age 42, unknown 27.0
1904 Male, age 53, unknown 26.8
2588 Male, age 74, left hemisphere 26.8
1865 Male, age 51, unknown 26.1
2823 Male, age 76, right hemisphere 25.5
2584 Male, age 75, left hemisphere 20.3
Substantia nigra
nTPM: 26.2
1916 Female, age 42, unknown 32.1
1941 Male, age 53, unknown 30.2
1851 Male, age 51, unknown 29.2
2241 Male, age 72, unknown 28.8
1889 Female, age 72, unknown 28.7
2583 Male, age 75, right hemisphere 25.1
2699 Male, age 18, unknown 23.6
2590 Female, age 75, unknown 22.4
2665 Male, age 74, both hemispheres 22.0
2409 Female, age 72, unknown 20.1
Superior colliculus
nTPM: 26.6
2587 Male, age 74, left hemisphere 31.0
1796 Male, age 53, unknown 28.9
2087 Female, age 72, unknown 28.7
1839 Male, age 51, unknown 28.3
2261 Male, age 18, unknown 27.4
1895 Male, age 76, right hemisphere 27.0
2668 Female, age 75, unknown 26.0
1913 Female, age 42, unknown 25.2
1995 Male, age 72, unknown 23.4
2664 Male, age 75, both hemispheres 20.6
Ventral tegmental area
nTPM: 29.2
2410 Female, age 72, unknown 32.8
1915 Female, age 42, unknown 30.5
2218 Male, age 76, both hemispheres 28.8
1942 Male, age 51, unknown 28.4
2223 Female, age 72, unknown 28.2
2021 Male, age 53, unknown 26.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.2
Samples: 139

Max nTPM: 61.5
Min nTPM: 24.1
Std nTPM: 6.8
Median nTPM: 37.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 61.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 61.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 56.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 54.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 54.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 52.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 52.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 50.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 50.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 49.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 49.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.6
FF:10158-103A5 76 years, female 33.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.2
Samples: 4

Max nTPM: 31.9
Min nTPM: 22.1
Sample A Female 31.9
Sample B Female 22.1
Sample C Male 22.5
Sample D Male 24.1
Midbrain
nTPM: 25.8
Samples: 4

Max nTPM: 35.0
Min nTPM: 20.5
Sample A Female 35.0
Sample B Female 23.8
Sample C Male 23.7
Sample D Male 20.5
Periaqueductal gray
nTPM: 21.2
Samples: 3

Max nTPM: 24.0
Min nTPM: 18.8
Sample B Female 24.0
Sample C Male 20.7
Sample D Male 18.8
Superior colliculi
nTPM: 28.5
Samples: 4

Max nTPM: 32.6
Min nTPM: 23.7
Sample A Female 32.5
Sample B Female 32.6
Sample C Male 25.1
Sample D Male 23.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.8
Samples: 4

Max nTPM: 34.4
Min nTPM: 27.6
Sample A Male 34.4
Sample B Male 28.3
Sample C Female 28.7
Sample D Female 27.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
512518 Antisense, RP_040809_02_A01, Mouse strain C57BL/6J (56 days, male) 17.3
71764879 Antisense, RP_050926_02_A04, Mouse strain C57BL/6J (56 days, male) 0.4

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