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  • CTXN1
TISSUE PRIMARY DATA BASAL GANGLIA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:673.2 nTPM
HPA Brain:754.1 nTPM
GTEx:673.2 nTPM
FANTOM5:1109.0 Scaled Tags Per Million
Pig:436.0 nTPM
Mouse:594.4 nTPM
Allen mouse:20.5 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA016669
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

754.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 754.1
2290 Female, age 72, unknown 1216.9
1857 Female, age 85, left hemisphere 942.8
2846 Female, age 79, unknown 862.3
2289 Male, age 61, right hemisphere 719.1
1854 Male, age 80, left hemisphere 669.2
2288 Male, age 75, left hemisphere 620.9
1781 Male, age 74, unknown 587.8
2481 Female, age 94, left hemisphere 414.0
Globus pallidus, externus
nTPM: 206.4
2567 Female, age 72, unknown 279.0
1996 Male, age 80, right hemisphere 244.7
2646 Male, age 61, right hemisphere 186.0
2772 Female, age 79, unknown 166.6
2395 Male, age 75, both hemispheres 155.7
Globus pallidus, internus
nTPM: 192.0
2483 Female, age 94, right hemisphere 387.7
2566 Female, age 72, unknown 241.4
2037 Male, age 80, right hemisphere 217.2
1818 Male, age 74, unknown 199.9
2287 Male, age 75, right hemisphere 110.6
2778 Female, age 91, both hemispheres 95.6
2111 Female, age 85, right hemisphere 91.7
Nucleus accumbens
nTPM: 681.7
1783 Male, age 74, unknown 933.9
1806 Female, age 85, left hemisphere 922.0
1856 Female, age 91, right hemisphere 856.1
2824 Male, age 61, right hemisphere 792.1
2698 Female, age 72, unknown 777.6
2286 Male, age 75, left hemisphere 643.7
2732 Male, age 80, right hemisphere 285.0
2391 Female, age 94, left hemisphere 243.2
Nucleus basalis of Meynert
nTPM: 434.4
2484 Female, age 94, left hemisphere 494.9
2393 Male, age 80, right hemisphere 493.0
2821 Male, age 75, both hemispheres 454.6
2569 Male, age 61, both hemispheres 295.3
Nucleus of the diagonal band
nTPM: 454.2
2195 Female, age 85, both hemispheres 637.5
2775 Male, age 80, right hemisphere 534.5
1812 Female, age 91, both hemispheres 473.8
2029 Male, age 61, right hemisphere 390.5
1979 Male, age 74, unknown 234.8
Putamen
nTPM: 686.3
1937 Female, age 91, right hemisphere 792.2
2647 Male, age 75, left hemisphere 790.8
1838 Male, age 80, right hemisphere 766.5
2489 Female, age 72, unknown 764.3
2466 Female, age 79, unknown 627.7
1829 Male, age 74, unknown 607.4
2482 Female, age 94, left hemisphere 455.3
Septal nuclei
nTPM: 388.1
1960 Male, age 74, unknown 699.9
2059 Female, age 85, both hemispheres 494.0
2031 Female, age 72, unknown 434.8
2629 Female, age 94, right hemisphere 413.7
2009 Female, age 91, both hemispheres 379.8
2394 Male, age 61, left hemisphere 184.8
2199 Male, age 80, right hemisphere 109.8
Stria terminalis, bed nucleus
nTPM: 354.5
1974 Female, age 91, both hemispheres 429.1
2486 Female, age 94, both hemispheres 419.3
2201 Male, age 74, unknown 215.2

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

673.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 572.9
Samples: 246

Max nTPM: 1479.7
Min nTPM: 8.2
Std nTPM: 227.2
Median nTPM: 575.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1479.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1374.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1218.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1132.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1121.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1119.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1104.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1087.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1059.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1042.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1028.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1007.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 981.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 974.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 949.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 942.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 923.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 922.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 920.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 906.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 896.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 882.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 879.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 851.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 846.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 837.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 836.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 835.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 834.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 834.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 823.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 811.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 808.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 805.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 799.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 797.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 793.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 779.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 777.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 768.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 764.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 754.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 751.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 747.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 746.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 744.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 732.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 732.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 731.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 730.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 726.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 721.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 719.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 711.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 708.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 697.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 695.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 691.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 690.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 689.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 688.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 686.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 681.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 680.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 674.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 670.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 670.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 668.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 668.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 666.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 666.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 665.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 664.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 662.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 657.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 655.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 654.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 653.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 651.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 651.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 650.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 648.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 642.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 642.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 639.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 636.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 636.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 635.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 634.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 633.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 628.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 628.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 627.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 625.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 623.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 623.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 623.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 621.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 614.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 609.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 609.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 609.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 606.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 606.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 605.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 605.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 603.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 601.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 600.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 599.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 597.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 597.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 595.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 591.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 590.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 586.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 584.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 583.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 581.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 580.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 580.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 579.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 576.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 574.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 571.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 560.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 556.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 553.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 553.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 551.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 549.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 546.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 545.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 536.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 535.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 534.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 532.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 531.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 528.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 525.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 523.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 521.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 520.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 519.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 516.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 512.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 506.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 505.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 498.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 497.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 496.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 496.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 494.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 494.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 493.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 490.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 489.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 487.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 486.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 485.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 483.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 478.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 477.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 472.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 470.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 459.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 458.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 455.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 453.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 452.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 451.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 447.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 446.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 444.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 437.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 437.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 432.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 430.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 429.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 425.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 424.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 420.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 418.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 418.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 417.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 416.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 416.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 408.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 407.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 407.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 407.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 406.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 405.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 404.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 399.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 395.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 391.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 387.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 374.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 370.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 366.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 364.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 363.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 362.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 362.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 360.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 354.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 354.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 341.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 338.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 337.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 328.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 325.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 324.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 322.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 317.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 315.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 315.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 310.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 300.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 298.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 296.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 292.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 285.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 284.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 283.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 279.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 264.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 262.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 248.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 244.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 240.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 238.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 225.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 223.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 215.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 206.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 205.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 190.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 188.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 185.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 183.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 173.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 138.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 120.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 8.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 673.2
Samples: 246

Max nTPM: 1825.4
Min nTPM: 33.6
Std nTPM: 291.8
Median nTPM: 651.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 1825.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 1557.1
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 1470.4
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 1399.0
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 1295.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 1284.7
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 1274.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 1252.9
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 1216.4
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 1210.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 1194.9
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 1168.2
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 1144.9
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 1143.3
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 1142.9
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 1132.4
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 1116.7
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 1111.0
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 1099.7
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 1095.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 1074.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 1069.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 1068.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 1066.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 1059.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 1039.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 1023.3
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 1018.0
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 1012.3
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 1012.1
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 1007.6
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 1002.9
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 982.3
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 976.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 975.6
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 967.7
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 963.3
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 954.7
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 950.0
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 926.6
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 926.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 925.8
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 924.3
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 922.3
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 915.8
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 915.7
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 915.3
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 914.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 913.0
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 907.8
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 906.7
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 903.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 897.4
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 887.8
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 886.3
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 884.9
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 881.3
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 881.0
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 880.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 880.0
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 873.3
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 872.1
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 869.1
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 868.9
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 868.8
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 868.0
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 865.4
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 859.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 855.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 844.8
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 842.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 842.0
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 831.0
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 813.3
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 812.2
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 809.1
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 803.2
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 801.9
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 800.8
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 797.8
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 797.2
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 790.3
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 787.7
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 786.9
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 782.5
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 782.2
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 782.1
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 780.1
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 776.4
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 775.5
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 763.3
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 757.3
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 756.9
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 747.9
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 735.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 726.0
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 721.7
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 719.0
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 716.6
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 714.5
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 713.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 713.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 706.5
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 703.7
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 700.7
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 691.7
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 691.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 685.7
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 683.8
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 682.4
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 680.1
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 673.9
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 673.2
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 673.1
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 667.4
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 667.2
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 666.4
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 666.2
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 663.7
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 660.7
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 654.5
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 653.4
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 653.3
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 649.3
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 641.9
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 637.2
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 636.9
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 636.1
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 635.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 634.3
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 629.9
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 628.7
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 627.4
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 624.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 622.0
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 620.4
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 619.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 616.3
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 611.8
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 607.5
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 605.7
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 604.7
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 603.3
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 602.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 599.9
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 592.7
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 592.4
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 589.4
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 581.5
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 581.3
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 580.4
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 576.9
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 569.7
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 564.3
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 561.0
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 559.8
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 554.9
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 553.7
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 552.9
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 552.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 547.5
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 547.0
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 545.4
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 544.1
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 539.7
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 532.7
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 532.3
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 529.7
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 517.4
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 513.7
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 505.9
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 502.1
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 496.6
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 494.9
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 488.4
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 488.3
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 485.0
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 484.2
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 484.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 482.1
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 480.8
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 477.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 477.3
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 476.6
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 476.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 475.2
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 474.1
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 470.1
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 460.5
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 459.1
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 458.2
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 457.2
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 455.0
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 452.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 451.5
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 446.9
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 440.8
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 436.1
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 433.2
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 429.5
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 429.2
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 428.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 425.1
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 423.6
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 414.6
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 411.1
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 408.1
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 395.3
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 395.2
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 394.7
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 394.3
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 392.8
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 387.9
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 381.9
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 375.5
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 374.8
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 364.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 340.8
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 338.3
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 336.4
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 316.4
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 316.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 314.1
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 310.7
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 308.0
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 304.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 280.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 270.3
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 267.5
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 252.0
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 249.6
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 241.9
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 224.4
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 202.8
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 191.8
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 174.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 165.0
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 112.0
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 96.4
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 93.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 89.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 88.4
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 86.7
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 68.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 52.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 33.6
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Brain - Putamen (basal ganglia)
Average nTPM: 576.0
Samples: 205

Max nTPM: 1670.9
Min nTPM: 102.4
Std nTPM: 245.4
Median nTPM: 550.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1670.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 1242.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 1162.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 1110.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 1095.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 1067.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 1066.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1047.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 1011.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 977.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 965.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 961.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 957.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 941.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 930.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 901.8
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 898.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 890.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 887.6
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 870.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 864.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 861.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 859.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 851.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 839.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 836.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 835.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 832.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 828.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 826.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 821.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 815.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 812.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 807.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 800.2
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 796.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 795.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 794.3
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 787.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 786.3
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 781.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 775.8
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 770.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 767.5
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 762.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 754.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 753.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 751.1
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 751.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 744.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 743.8
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 743.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 738.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 733.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 730.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 729.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 726.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 721.2
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 720.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 717.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 717.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 712.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 712.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 709.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 694.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 682.0
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 675.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 673.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 668.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 667.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 667.3
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 667.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 659.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 654.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 654.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 648.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 643.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 640.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 633.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 633.0
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 632.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 629.2
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 628.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 627.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 625.5
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 625.2
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 622.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 617.7
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 617.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 611.9
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 607.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 607.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 605.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 603.6
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 590.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 587.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 584.7
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 581.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 576.1
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 575.2
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 573.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 554.4
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 550.1
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 546.8
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 546.8
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 545.5
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 541.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 540.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 538.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 535.8
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 527.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 522.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 518.5
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 518.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 517.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 516.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 515.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 511.8
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 508.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 505.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 505.4
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 498.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 497.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 495.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 495.3
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 494.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 494.6
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 493.6
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 492.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 488.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 486.1
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 481.9
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 478.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 478.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 475.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 473.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 470.5
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 469.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 467.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 466.4
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 463.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 463.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 462.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 452.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 447.8
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 436.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 436.0
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 435.0
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 433.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 432.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 429.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 419.8
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 419.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 418.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 410.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 409.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 401.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 392.4
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 389.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 384.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 383.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 375.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 375.0
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 365.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 363.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 362.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 355.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 342.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 339.9
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 334.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 328.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 327.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 322.8
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 316.9
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 311.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 311.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 295.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 295.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 294.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 292.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 278.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 277.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 268.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 266.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 266.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 252.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 239.3
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 234.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 230.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 224.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 221.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 217.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 211.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 196.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 176.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 154.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 151.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 149.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 148.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 145.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 139.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 138.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 119.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 107.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 102.4
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1109.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 832.7
FF:10164-103B2 76 years, female 832.7
Nucleus accumbens
Scaled Tags Per Million: 787.5
FF:10037-101F1 23-56 years, mixed 787.5
Putamen
Scaled Tags Per Million: 1109.0
FF:10176-103C5 60 years, female 1109.0
Globus pallidus
Scaled Tags Per Million: 144.4
FF:10175-103C4 60 years, female 177.3
FF:10161-103A8 76 years, female 111.6

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

436.0
Pig sample Sample description nTPM
Caudate
nTPM: 436.0
Samples: 4

Max nTPM: 521.1
Min nTPM: 342.2
Sample A Female 362.6
Sample B Female 518.0
Sample C Male 521.1
Sample D Male 342.2
Putamen
nTPM: 333.2
Samples: 4

Max nTPM: 432.2
Min nTPM: 180.8
Sample A Female 180.8
Sample B Female 350.3
Sample C Male 369.3
Sample D Male 432.2
Septum
nTPM: 216.1
Samples: 4

Max nTPM: 317.8
Min nTPM: 122.0
Sample A Female 317.8
Sample B Female 263.5
Sample C Male 160.9
Sample D Male 122.0
Ventral pallidum
nTPM: 285.8
Samples: 4

Max nTPM: 357.2
Min nTPM: 183.8
Sample A Female 357.2
Sample B Female 276.5
Sample C Male 183.8
Sample D Male 325.5

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

594.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 594.4
Samples: 4

Max nTPM: 626.7
Min nTPM: 559.6
Sample A Male 580.5
Sample B Male 626.7
Sample C Female 559.6
Sample D Female 610.9
Septum
nTPM: 252.2
Samples: 4

Max nTPM: 298.9
Min nTPM: 213.5
Sample A Male 298.9
Sample B Male 254.2
Sample C Female 242.2
Sample D Female 213.5
Ventral forebrain
nTPM: 438.2
Samples: 4

Max nTPM: 506.8
Min nTPM: 374.3
Sample A Male 434.4
Sample B Male 374.3
Sample C Female 506.8
Sample D Female 437.2

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 20.5
74586669 Antisense, RP_051214_01_B09, Mouse strain C57BL/6J (56 days, male) 22.5
69015811 Antisense, RP_050315_01_G04, Mouse strain C57BL/6J (56 days, male) 18.6
Pallidum
Expression energy: 11.6
69015811 Antisense, RP_050315_01_G04, Mouse strain C57BL/6J (56 days, male) 13.9
74586669 Antisense, RP_051214_01_B09, Mouse strain C57BL/6J (56 days, male) 9.4

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