MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:145.3 nTPM
HPA Brain:185.5 nTPM
GTEx:145.3 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:126.9 nTPM
Mouse:48.2 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 185.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.3
2219 Male, age 76, both hemispheres 256.6
2586 Male, age 75, left hemisphere 111.8
2666 Male, age 74, left hemisphere 97.1
2828 Female, age 72, unknown 94.3
1827 Male, age 72, unknown 88.8
1870 Female, age 42, unknown 88.2
1833 Male, age 53, unknown 77.0
2411 Female, age 72, unknown 76.2
1830 Male, age 51, unknown 61.3
2019 Male, age 18, unknown 11.8
Dorsal raphe nucleus
nTPM: 133.6
2047 Male, age 72, unknown 168.9
2298 Female, age 72, unknown 167.7
2750 Male, age 76, both hemispheres 113.3
2016 Female, age 72, unknown 112.5
1828 Male, age 53, unknown 105.5
Inferior colliculus
nTPM: 72.6
2849 Male, age 72, unknown 110.7
1890 Male, age 53, unknown 71.0
2097 Female, age 72, unknown 55.6
1848 Female, age 42, unknown 53.0
Median raphe nucleus
nTPM: 185.5
2220 Male, age 76, midline 185.5
Periaquaductal grey, anterior
nTPM: 142.4
1795 Male, age 51, unknown 184.4
2502 Female, age 75, unknown 134.2
1947 Male, age 18, unknown 108.5
Periaquaductal grey, dorsal
nTPM: 139.1
1840 Male, age 53, unknown 219.1
2850 Male, age 76, both hemispheres 179.4
2464 Female, age 72, unknown 86.5
1831 Male, age 72, unknown 71.3
Periaquaductal grey, lateral
nTPM: 132.4
2272 Male, age 74, both hemispheres 163.2
2140 Male, age 76, both hemispheres 136.1
2053 Male, age 18, unknown 97.9
Pretectal area
nTPM: 73.0
2825 Male, age 18, unknown 181.9
2224 Female, age 72, unknown 153.3
2273 Male, age 74, both hemispheres 125.7
2407 Male, age 75, both hemispheres 71.3
2667 Female, age 75, unknown 50.6
1816 Male, age 51, unknown 42.9
1815 Male, age 53, unknown 40.8
2316 Male, age 76, right hemisphere 40.6
1944 Female, age 72, unknown 36.3
2007 Male, age 72, unknown 35.9
1817 Female, age 42, unknown 24.4
Red nucleus
nTPM: 24.7
2584 Male, age 75, left hemisphere 72.8
2227 Male, age 72, unknown 31.5
2769 Male, age 72, unknown 30.8
2725 Female, age 75, unknown 25.2
2588 Male, age 74, left hemisphere 24.3
1954 Female, age 42, unknown 18.4
2785 Male, age 18, unknown 17.9
2503 Female, age 72, unknown 17.5
1904 Male, age 53, unknown 17.4
1821 Female, age 72, unknown 16.1
1865 Male, age 51, unknown 14.2
2823 Male, age 76, right hemisphere 10.8
Substantia nigra
nTPM: 177.1
2699 Male, age 18, unknown 464.4
2665 Male, age 74, both hemispheres 283.7
1851 Male, age 51, unknown 269.0
2409 Female, age 72, unknown 162.3
1916 Female, age 42, unknown 144.6
2241 Male, age 72, unknown 128.1
2583 Male, age 75, right hemisphere 106.1
2590 Female, age 75, unknown 85.9
1941 Male, age 53, unknown 85.6
1889 Female, age 72, unknown 41.5
Superior colliculus
nTPM: 80.4
2664 Male, age 75, both hemispheres 143.3
1796 Male, age 53, unknown 131.5
2668 Female, age 75, unknown 123.5
2261 Male, age 18, unknown 91.5
1839 Male, age 51, unknown 79.1
2587 Male, age 74, left hemisphere 73.0
1995 Male, age 72, unknown 48.4
1913 Female, age 42, unknown 40.0
2087 Female, age 72, unknown 37.4
1895 Male, age 76, right hemisphere 36.2
Ventral tegmental area
nTPM: 155.6
1915 Female, age 42, unknown 241.9
2223 Female, age 72, unknown 203.8
2021 Male, age 53, unknown 164.6
1942 Male, age 51, unknown 137.9
2218 Male, age 76, both hemispheres 106.8
2410 Female, age 72, unknown 78.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 145.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 145.3
Samples: 139

Max nTPM: 807.3
Min nTPM: 7.4
Std nTPM: 156.4
Median nTPM: 93.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 807.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 768.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 745.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 735.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 625.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 609.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 541.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 516.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 432.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 384.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 362.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.3
FF:10158-103A5 76 years, female 32.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 126.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.1
Samples: 4

Max nTPM: 107.6
Min nTPM: 56.6
Sample A Female 107.6
Sample B Female 69.3
Sample C Male 106.7
Sample D Male 56.6
Midbrain
nTPM: 75.8
Samples: 4

Max nTPM: 93.2
Min nTPM: 42.8
Sample A Female 80.5
Sample B Female 86.6
Sample C Male 42.8
Sample D Male 93.2
Periaqueductal gray
nTPM: 126.9
Samples: 3

Max nTPM: 170.4
Min nTPM: 83.2
Sample B Female 83.2
Sample C Male 170.4
Sample D Male 127.0
Superior colliculi
nTPM: 49.9
Samples: 4

Max nTPM: 103.6
Min nTPM: 21.2
Sample A Female 103.6
Sample B Female 21.2
Sample C Male 28.7
Sample D Male 45.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 48.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.2
Samples: 4

Max nTPM: 54.3
Min nTPM: 44.4
Sample A Male 54.3
Sample B Male 44.9
Sample C Female 44.4
Sample D Female 49.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
74586669 Antisense, RP_051214_01_B09, Mouse strain C57BL/6J (56 days, male) 5.0
69015811 Antisense, RP_050315_01_G04, Mouse strain C57BL/6J (56 days, male) 3.0

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