We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GRINA
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • GRINA
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:175.1 nTPM
GTEx:175.1 nTPM
FANTOM5:547.6 Scaled Tags Per Million
Pig:245.4 nTPM
Mouse:511.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 175.1
Samples: 105

Max nTPM: 344.0
Min nTPM: 32.5
Std nTPM: 63.5
Median nTPM:
218_1 71 years, female 344.0
319_1 81 years, male 306.8
377_1 82 years, female 298.6
425_1 59 years, female 281.3
163_1 78 years, male 273.0
352_1 62 years, male 270.2
316_1 62 years, male 256.7
321_1 62 years, female 255.9
386_1 76 years, male 254.1
292_1 71 years, male 250.8
376_1 75 years, female 249.8
354_1 81 years, female 248.8
322_1 76 years, male 248.2
406_1 79 years, male 246.8
350_1 84 years, female 246.4
356_1 87 years, female 246.4
243_1 75 years, male 245.5
318_1 68 years, male 243.4
379_1 60 years, male 239.2
349_1 83 years, male 237.0
177_1 74 years, male 231.1
335_1 73 years, female 231.0
293_1 68 years, female 230.7
394_1 75 years, female 230.6
375_1 74 years, female 228.3
320_1 89 years, female 225.5
355_1 70 years, female 225.2
172_1 72 years, female 222.8
480_1 63 years, male 219.6
251_1 78 years, male 218.7
237_1 82 years, male 218.3
347_1 72 years, male 217.7
447_1 81 years, male 217.7
189_1 76 years, male 211.4
405_1 91 years, male 210.1
389_1 86 years, female 209.4
246_1 77 years, male 208.6
286_1 68 years, female 204.5
353_1 82 years, female 203.2
266_1 85 years, male 200.8
317_1 60 years, male 200.6
384_1 83 years, male 199.6
404_1 82 years, female 196.5
229_1 69 years, female 195.3
517_1 88 years, male 194.1
173_1 67 years, male 192.9
6_1 73 years, female 190.1
452_1 88 years, female 189.7
503_1 68 years, male 188.8
295_1 61 years, female 186.8
351_1 91 years, male 186.4
506_1 65 years, male 183.9
348_1 84 years, male 183.7
254_1 77 years, female 182.8
526_1 61 years, male 180.0
264_1 73 years, female 173.7
518_1 75 years, female 173.0
291_1 76 years, male 168.7
468_1 89 years, male 167.2
324_1 76 years, male 164.9
265_1 87 years, male 160.1
17_1 71 years, male 158.1
307_1 66 years, female 157.2
4_1 88 years, female 151.8
396_1 62 years, male 150.0
99_1 64 years, male 149.1
311_1 78 years, male 148.0
499_1 55 years, female 147.0
153_1 70 years, female 146.2
18_1 88 years, male 144.7
35_1 74 years, female 139.3
217_1 76 years, male 137.3
137_1 83 years, male 130.5
288_1 66 years, female 130.3
145_1 84 years, male 129.0
115_1 83 years, male 128.8
120_1 70 years, female 128.5
81_1 67 years, male 120.3
313_1 79 years, female 119.5
41_1 94 years, female 117.3
2_1 77 years, female 117.1
9_1 66 years, female 116.8
415_1 77 years, female 113.5
315_1 62 years, female 113.0
142_1 61 years, female 112.5
314_1 67 years, male 110.8
109_1 81 years, female 108.0
126_1 63 years, male 107.8
308_1 70 years, female 105.6
414_1 84 years, female 102.6
466_1 57 years, female 101.7
42_1 85 years, male 101.5
117_1 61 years, male 99.7
495_1 57 years, female 99.7
32_1 67 years, male 91.0
139_1 64 years, female 89.7
43_1 64 years, female 88.8
501_1 88 years, male 87.2
162_1 79 years, female 86.6
119_1 70 years, female 73.9
89_1 63 years, male 61.6
413_1 59 years, female 60.4
490_1 67 years, female 55.4
149_1 88 years, male 52.3
491_1 89 years, female 32.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

547.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 547.6
FF:10030-101E3 24-65 years, mixed 547.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

245.4
Pig sample Sample description nTPM
Retina
nTPM: 245.5
Samples: 4

Max nTPM: 323.5
Min nTPM: 192.9
Sample A Female 238.5
Sample B Female 226.9
Sample C Male 323.5
Sample D Male 192.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

511.5
Mouse sample Sample description nTPM
Retina
nTPM: 511.5
Samples: 4

Max nTPM: 594.6
Min nTPM: 448.2
Sample A Male 483.8
Sample B Male 519.5
Sample C Female 594.6
Sample D Female 448.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org