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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:150.9 nTPM
HPA Brain:237.8 nTPM
GTEx:150.9 nTPM
FANTOM5:488.3 Scaled Tags Per Million
Pig:136.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 204.1
2565 Male, age 75, midline 278.2
1981 Female, age 72, midline 196.8
2194 Female, age 79, both hemispheres 191.4
2816 Male, age 47, midline 189.1
2048 Male, age 55, midline 165.2
Cervical spinal cord, dorsal horn
nTPM: 237.8
2721 Male, age 90, both hemispheres 308.6
2297 Male, age 75, both hemispheres 302.3
2069 Male, age 47, both hemispheres 226.8
1877 Male, age 55, unknown 210.6
2173 Female, age 72, unknown 204.5
2296 Male, age 66, both hemispheres 174.4
Cervical spinal cord, ventral horn
nTPM: 220.5
2809 Male, age 90, both hemispheres 243.8
2295 Male, age 66, both hemispheres 240.9
2480 Male, age 75, both hemispheres 237.8
2098 Female, age 72, unknown 218.2
2068 Male, age 55, unknown 192.2
2820 Female, age 79, both hemispheres 190.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 150.9
Samples: 159

Max nTPM: 311.2
Min nTPM: 80.8
Std nTPM: 34.6
Median nTPM: 145.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 311.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 267.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 251.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 242.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 223.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 216.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 216.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 215.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 211.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 205.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 202.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 198.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 198.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 197.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 192.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 192.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 189.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 189.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 187.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 187.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 186.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 186.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 183.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 183.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 182.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 181.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 179.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 178.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 176.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 176.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 176.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 175.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 174.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 174.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 174.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 174.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 172.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 171.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 170.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 170.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 170.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 169.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 169.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 168.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 168.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 168.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 166.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 165.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 165.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 165.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 165.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 163.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 163.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 161.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 161.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 160.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 158.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 158.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 157.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 157.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 156.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 156.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 156.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 155.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 154.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 154.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 153.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 153.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 153.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 152.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 152.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 151.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 150.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 149.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 148.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 148.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 147.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 147.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 147.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 145.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 143.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 143.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 143.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 143.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 143.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 143.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 143.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 142.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 142.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 142.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 141.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 141.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 140.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 140.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 139.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 137.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 136.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 136.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 136.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 135.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 135.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 135.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 135.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 134.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 133.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 133.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 133.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 132.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 132.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 131.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 131.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 130.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 130.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 129.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 129.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 127.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 127.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 127.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 126.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 125.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 125.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 124.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 124.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 124.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 123.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 123.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 122.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 121.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 121.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 120.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 120.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 120.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 119.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 117.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 117.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 117.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 116.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 116.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 116.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 116.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 115.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 115.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 114.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 114.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 114.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 114.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 112.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 110.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 108.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 108.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 107.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 103.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 100.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 100.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 98.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 97.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 89.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 83.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 80.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

488.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 488.3
FF:10181-103D1 60 years, female 663.2
FF:10159-103A6 76 years, female 313.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 109.3
Samples: 4

Max nTPM: 146.6
Min nTPM: 82.6
Sample A Female 146.6
Sample B Female 85.0
Sample C Male 82.6
Sample D Male 122.9
Ventral spinal cord
nTPM: 136.4
Samples: 4

Max nTPM: 162.3
Min nTPM: 89.9
Sample A Female 159.1
Sample B Female 134.2
Sample C Male 162.3
Sample D Male 89.9

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