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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:877.8 nTPM
HPA Brain:582.2 nTPM
GTEx:877.8 nTPM
FANTOM5:468.7 Scaled Tags Per Million
Pig:647.9 nTPM
Mouse:2292.0 nTPM
Allen mouse:17.5 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

582.2
Sample id Sample description nTPM
Amygdala
nTPM: 561.3
2514 Male, age 75, right hemisphere 599.0
2814 Male, age 76, right hemisphere 593.0
2695 Female, age 67, right hemisphere 588.3
2517 Female, age 94, left hemisphere 551.0
1987 Female, age 91, left hemisphere 474.9
Basal amygdala
nTPM: 527.9
2609 Male, age 75, right hemisphere 650.1
2110 Male, age 80, left hemisphere 580.4
2243 Female, age 91, right hemisphere 525.1
2827 Female, age 67, right hemisphere 499.8
1955 Male, age 76, both hemispheres 457.8
2685 Female, age 94, left hemisphere 454.2
Central amygdala
nTPM: 576.8
2826 Female, age 94, left hemisphere 789.4
2515 Male, age 75, right hemisphere 677.6
1905 Male, age 76, both hemispheres 542.7
2239 Male, age 80, left hemisphere 519.0
2701 Female, age 91, right hemisphere 355.0
Corticomedial amygdala
nTPM: 496.2
2428 Male, age 75, right hemisphere 647.3
2829 Male, age 80, left hemisphere 580.4
2240 Male, age 76, both hemispheres 451.7
2429 Female, age 94, left hemisphere 450.0
2242 Female, age 91, right hemisphere 436.8
2535 Female, age 67, right hemisphere 411.2
Lateral amygdala
nTPM: 582.2
2516 Male, age 75, right hemisphere 767.8
2534 Female, age 94, left hemisphere 678.8
2830 Female, age 67, right hemisphere 614.5
1883 Male, age 76, both hemispheres 512.5
2256 Male, age 80, left hemisphere 501.4
2255 Female, age 91, right hemisphere 418.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

877.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 877.8
Samples: 152

Max nTPM: 4014.2
Min nTPM: 258.5
Std nTPM: 413.6
Median nTPM: 797.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4014.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2256.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2213.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1935.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1765.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1698.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1649.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1531.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1497.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1473.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1428.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1401.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1382.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1281.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1258.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1236.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1231.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1204.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1179.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1167.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1164.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1139.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1108.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1093.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1078.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1069.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1066.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1050.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1050.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1046.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1045.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1042.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1041.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1028.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1027.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1024.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1018.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1009.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1000.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 996.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 982.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 976.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 975.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 964.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 951.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 945.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 938.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 927.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 924.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 924.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 912.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 911.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 909.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 893.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 885.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 879.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 877.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 869.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 869.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 862.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 861.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 859.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 857.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 853.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 852.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 843.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 842.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 842.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 832.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 831.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 823.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 817.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 805.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 803.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 803.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 800.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 794.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 793.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 791.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 791.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 790.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 784.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 783.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 782.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 774.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 768.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 752.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 750.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 726.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 725.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 723.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 721.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 718.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 718.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 709.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 700.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 700.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 698.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 694.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 688.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 684.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 681.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 680.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 677.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 677.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 676.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 675.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 674.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 671.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 666.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 666.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 655.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 655.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 654.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 641.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 640.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 636.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 636.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 633.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 632.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 617.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 612.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 611.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 610.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 598.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 595.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 594.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 594.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 591.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 585.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 584.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 582.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 581.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 574.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 569.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 563.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 562.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 541.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 519.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 517.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 510.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 487.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 472.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 463.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 449.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 442.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 439.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 425.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 418.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 371.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 356.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 258.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

468.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 468.7
FF:10151-102I7 76 years, female 468.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

647.9
Pig sample Sample description nTPM
Amygdala
nTPM: 647.9
Samples: 4

Max nTPM: 985.9
Min nTPM: 423.9
Sample A Female 985.9
Sample B Female 584.9
Sample C Male 597.0
Sample D Male 423.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2292.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 2292.0
Samples: 4

Max nTPM: 2707.9
Min nTPM: 1944.1
Sample A Male 1944.1
Sample B Male 2247.9
Sample C Female 2707.9
Sample D Female 2268.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.5
69873540 Antisense, RP_050512_01_E03, Mouse strain C57BL/6J (56 days, male) 17.5

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