MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:130.3 nTPM
HPA Brain:416.9 nTPM
GTEx:130.3 nTPM
FANTOM5:4.6 Scaled Tags Per Million
Pig:999.2 nTPM
Mouse:62.1 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 416.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.9
2219 Male, age 76, both hemispheres 206.7
1833 Male, age 53, unknown 92.2
2586 Male, age 75, left hemisphere 71.3
1830 Male, age 51, unknown 53.4
2411 Female, age 72, unknown 36.4
2019 Male, age 18, unknown 3.8
1870 Female, age 42, unknown 3.3
1827 Male, age 72, unknown 0.7
2666 Male, age 74, left hemisphere 0.7
2828 Female, age 72, unknown 0.4
Dorsal raphe nucleus
nTPM: 48.3
2016 Female, age 72, unknown 66.8
2047 Male, age 72, unknown 64.5
1828 Male, age 53, unknown 52.6
2298 Female, age 72, unknown 33.9
2750 Male, age 76, both hemispheres 23.8
Inferior colliculus
nTPM: 1.6
2849 Male, age 72, unknown 3.1
1848 Female, age 42, unknown 1.5
1890 Male, age 53, unknown 1.1
2097 Female, age 72, unknown 0.6
Median raphe nucleus
nTPM: 85.0
2220 Male, age 76, midline 85.0
Periaquaductal grey, anterior
nTPM: 1.2
2502 Female, age 75, unknown 2.5
1947 Male, age 18, unknown 0.9
1795 Male, age 51, unknown 0.1
Periaquaductal grey, dorsal
nTPM: 5.3
2464 Female, age 72, unknown 8.0
2850 Male, age 76, both hemispheres 7.0
1840 Male, age 53, unknown 5.6
1831 Male, age 72, unknown 0.7
Periaquaductal grey, lateral
nTPM: 6.0
2140 Male, age 76, both hemispheres 13.2
2272 Male, age 74, both hemispheres 4.3
2053 Male, age 18, unknown 0.5
Pretectal area
nTPM: 2.6
2224 Female, age 72, unknown 11.4
2825 Male, age 18, unknown 6.4
1944 Female, age 72, unknown 5.3
2273 Male, age 74, both hemispheres 2.7
2667 Female, age 75, unknown 2.2
2007 Male, age 72, unknown 0.8
1815 Male, age 53, unknown 0.2
2316 Male, age 76, right hemisphere 0.1
1816 Male, age 51, unknown 0.0
1817 Female, age 42, unknown 0.0
2407 Male, age 75, both hemispheres 0.0
Red nucleus
nTPM: 5.3
2584 Male, age 75, left hemisphere 39.2
2769 Male, age 72, unknown 5.6
2227 Male, age 72, unknown 5.1
2725 Female, age 75, unknown 4.2
1865 Male, age 51, unknown 3.4
2785 Male, age 18, unknown 2.1
1821 Female, age 72, unknown 1.7
2588 Male, age 74, left hemisphere 1.0
2503 Female, age 72, unknown 0.6
1904 Male, age 53, unknown 0.4
1954 Female, age 42, unknown 0.1
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 416.9
1916 Female, age 42, unknown 946.1
2699 Male, age 18, unknown 908.2
2241 Male, age 72, unknown 896.4
1941 Male, age 53, unknown 389.7
1851 Male, age 51, unknown 339.7
2665 Male, age 74, both hemispheres 254.6
2409 Female, age 72, unknown 247.7
1889 Female, age 72, unknown 118.9
2583 Male, age 75, right hemisphere 39.8
2590 Female, age 75, unknown 28.0
Superior colliculus
nTPM: 1.3
2087 Female, age 72, unknown 5.4
2668 Female, age 75, unknown 3.0
2587 Male, age 74, left hemisphere 1.4
1839 Male, age 51, unknown 0.8
1995 Male, age 72, unknown 0.8
1796 Male, age 53, unknown 0.6
2261 Male, age 18, unknown 0.6
2664 Male, age 75, both hemispheres 0.2
1895 Male, age 76, right hemisphere 0.0
1913 Female, age 42, unknown 0.0
Ventral tegmental area
nTPM: 311.2
1915 Female, age 42, unknown 556.7
2218 Male, age 76, both hemispheres 424.1
2410 Female, age 72, unknown 412.7
1942 Male, age 51, unknown 272.4
2223 Female, age 72, unknown 108.3
2021 Male, age 53, unknown 93.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 130.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.3
Samples: 139

Max nTPM: 797.4
Min nTPM: 0.0
Std nTPM: 158.9
Median nTPM: 67.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 797.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 645.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 576.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 504.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 503.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 469.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 463.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 462.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 443.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 431.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 424.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 4.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.6
FF:10158-103A5 76 years, female 4.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 999.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 999.2
Samples: 4

Max nTPM: 1801.2
Min nTPM: 9.6
Sample A Female 1559.3
Sample B Female 626.7
Sample C Male 1801.2
Sample D Male 9.6
Midbrain
nTPM: 99.5
Samples: 4

Max nTPM: 394.6
Min nTPM: 0.7
Sample A Female 1.9
Sample B Female 394.6
Sample C Male 0.7
Sample D Male 0.8
Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 72.0
Min nTPM: 6.9
Sample B Female 6.9
Sample C Male 72.0
Sample D Male 17.0
Superior colliculi
nTPM: 1.4
Samples: 4

Max nTPM: 2.4
Min nTPM: 0.3
Sample A Female 2.4
Sample B Female 2.1
Sample C Male 0.3
Sample D Male 0.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 62.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.1
Samples: 4

Max nTPM: 64.2
Min nTPM: 59.3
Sample A Male 63.1
Sample B Male 59.3
Sample C Female 64.2
Sample D Female 61.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
1056 Antisense, RP_Baylor_103073, Mouse strain C57BL/6J (56 days, male) 1.8
1058 Antisense, RP_Baylor_103073, Mouse strain C57BL/6J (56 days, male) 1.3

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