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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:249.3 nTPM
HPA:249.3 nTPM
GTEx:228.5 nTPM
FANTOM5:327.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045209
Endocrine cells Medium
Enterocytes Medium
Enterocytes - Microvilli Not detected
Goblet cells Medium
Paneth cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.3
overview
Male, age 65
Small intestine sample 232
nTPM: 291.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 254.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 255.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 195.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

228.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 228.5
Samples: 187

Max nTPM: 1079.1
Min nTPM: 83.0
Std nTPM: 100.2
Median nTPM: 213.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1079.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 460.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 451.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 416.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 412.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 409.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 399.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 380.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 378.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 376.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 371.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 369.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 366.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 364.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 364.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 359.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 348.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 345.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 343.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 342.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 329.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 326.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 326.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 322.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 322.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 318.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 316.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 311.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 310.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 308.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 308.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 306.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 305.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 298.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 297.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 295.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 293.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 289.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 287.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 284.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 279.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 277.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 277.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 275.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 275.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 275.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 273.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 272.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 271.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 269.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 267.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 265.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 265.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 263.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 262.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 260.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 260.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 259.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 259.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 257.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 257.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 256.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 255.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 255.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 252.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 251.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 251.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 246.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 243.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 241.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 238.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 237.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 237.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 233.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 231.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 231.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 231.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 230.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 230.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 230.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 228.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 228.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 228.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 227.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 226.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 225.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 224.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 221.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 220.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 217.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 216.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 216.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 214.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 213.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 212.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 210.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 208.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 204.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 203.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 202.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 201.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 201.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 201.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 199.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 199.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 197.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 196.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 196.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 196.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 195.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 192.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 191.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 190.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 190.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 188.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 186.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 185.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 184.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 181.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 181.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 180.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 177.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 175.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 174.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 174.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 173.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 173.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 172.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 171.6
GTEX-1192X-2526-SM-59868 50-59 years, male 171.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 171.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 170.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 169.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 169.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 168.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 167.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 167.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 165.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 163.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 162.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 162.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 161.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 160.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 159.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 159.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 158.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 156.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 155.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 154.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 154.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 153.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 153.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 153.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 152.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 152.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 151.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 149.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 146.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 146.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 143.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 142.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 141.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 137.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 137.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 135.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 134.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 134.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 132.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 132.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 131.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 131.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 129.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 129.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 126.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 125.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 124.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 123.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 117.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 117.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 113.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 109.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 108.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 107.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 106.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 103.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 90.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 83.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

327.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 327.8
FF:10024-101D6 15,40,85 years, mixed 327.8

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