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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:170.7 nTPM
HPA Brain:99.3 nTPM
GTEx:170.7 nTPM
FANTOM5:276.9 Scaled Tags Per Million
Pig:121.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 89.7
1981 Female, age 72, midline 126.6
2565 Male, age 75, midline 85.7
2048 Male, age 55, midline 84.3
2194 Female, age 79, both hemispheres 76.8
2816 Male, age 47, midline 74.8
Cervical spinal cord, dorsal horn
nTPM: 93.2
2173 Female, age 72, unknown 130.4
2069 Male, age 47, both hemispheres 108.7
2296 Male, age 66, both hemispheres 108.5
1877 Male, age 55, unknown 72.9
2721 Male, age 90, both hemispheres 70.1
2297 Male, age 75, both hemispheres 68.6
Cervical spinal cord, ventral horn
nTPM: 99.3
2098 Female, age 72, unknown 155.8
2809 Male, age 90, both hemispheres 118.4
2480 Male, age 75, both hemispheres 102.8
2295 Male, age 66, both hemispheres 83.8
2068 Male, age 55, unknown 80.6
2820 Female, age 79, both hemispheres 54.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 170.7
Samples: 159

Max nTPM: 331.3
Min nTPM: 76.1
Std nTPM: 40.4
Median nTPM: 163.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 331.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 313.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 284.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 277.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 274.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 271.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 260.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 259.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 258.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 236.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 235.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 222.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 221.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 219.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 218.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 213.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 212.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 210.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 209.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 208.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 207.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 207.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 206.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 205.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 203.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 203.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 203.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 202.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 201.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 198.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 197.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 197.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 196.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 196.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 195.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 194.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 193.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 191.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 190.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 189.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 189.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 188.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 188.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 187.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 187.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 187.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 187.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 186.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 185.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 185.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 184.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 184.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 182.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 180.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 180.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 180.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 179.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 179.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 178.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 177.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 175.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 174.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 174.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 172.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 172.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 172.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 172.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 171.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 171.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 171.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 170.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 170.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 169.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 169.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 167.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 167.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 166.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 164.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 164.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 163.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 163.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 162.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 162.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 162.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 161.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 161.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 160.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 160.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 160.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 160.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 160.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 159.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 159.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 158.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 158.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 158.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 158.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 157.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 157.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 157.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 157.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 156.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 155.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 155.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 154.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 154.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 154.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 153.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 152.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 152.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 150.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 150.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 150.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 148.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 148.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 147.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 146.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 145.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 145.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 145.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 144.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 143.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 143.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 143.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 142.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 142.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 142.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 141.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 141.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 140.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 140.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 139.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 139.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 136.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 136.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 136.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 133.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 132.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 130.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 128.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 127.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 126.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 126.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 122.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 122.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 121.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 121.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 120.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 116.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 116.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 114.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 110.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 109.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 108.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 105.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 103.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 99.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 91.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 76.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

276.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 276.9
FF:10181-103D1 60 years, female 440.3
FF:10159-103A6 76 years, female 113.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 121.8
Samples: 4

Max nTPM: 182.8
Min nTPM: 87.3
Sample A Female 87.3
Sample B Female 128.0
Sample C Male 182.8
Sample D Male 89.2
Ventral spinal cord
nTPM: 117.9
Samples: 4

Max nTPM: 127.5
Min nTPM: 101.2
Sample A Female 101.2
Sample B Female 121.5
Sample C Male 127.5
Sample D Male 121.2

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