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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1008.7 nTPM
HPA Brain:434.5 nTPM
GTEx:1008.7 nTPM
FANTOM5:47.6 Scaled Tags Per Million
Pig:181.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

434.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 351.4
2565 Male, age 75, midline 428.3
1981 Female, age 72, midline 402.0
2048 Male, age 55, midline 365.2
2816 Male, age 47, midline 293.7
2194 Female, age 79, both hemispheres 267.6
Cervical spinal cord, dorsal horn
nTPM: 361.1
2069 Male, age 47, both hemispheres 457.6
2173 Female, age 72, unknown 445.2
1877 Male, age 55, unknown 376.2
2296 Male, age 66, both hemispheres 365.7
2721 Male, age 90, both hemispheres 275.1
2297 Male, age 75, both hemispheres 246.6
Cervical spinal cord, ventral horn
nTPM: 434.5
2480 Male, age 75, both hemispheres 585.8
2809 Male, age 90, both hemispheres 539.7
2098 Female, age 72, unknown 507.0
2295 Male, age 66, both hemispheres 403.3
2068 Male, age 55, unknown 360.2
2820 Female, age 79, both hemispheres 210.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1008.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1008.7
Samples: 159

Max nTPM: 1978.1
Min nTPM: 303.5
Std nTPM: 324.7
Median nTPM: 968.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1978.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1863.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1815.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1808.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1767.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1755.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1741.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1679.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1642.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1641.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1543.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1497.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1488.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1471.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1451.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1430.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1426.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1398.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1388.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1388.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1385.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1381.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1372.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1361.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1352.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1344.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1334.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1328.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1327.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1301.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1292.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1287.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1282.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1276.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1256.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1256.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1250.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1208.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1191.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1190.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1178.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1176.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1176.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1175.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1168.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1159.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1152.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1147.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1145.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1130.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1120.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1116.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1112.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1110.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1099.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1096.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1096.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1095.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1071.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1067.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1063.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1059.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1057.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1050.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1048.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1045.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1037.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1032.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1025.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1021.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1019.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1017.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1011.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 993.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 990.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 988.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 985.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 982.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 969.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 968.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 964.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 955.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 954.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 952.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 948.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 928.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 922.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 917.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 917.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 914.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 913.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 906.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 897.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 892.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 891.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 891.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 890.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 889.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 885.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 881.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 867.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 850.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 841.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 837.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 837.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 836.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 809.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 802.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 801.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 798.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 794.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 780.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 778.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 777.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 771.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 770.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 768.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 768.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 767.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 765.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 763.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 763.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 763.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 752.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 746.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 745.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 740.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 735.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 735.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 724.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 724.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 723.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 723.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 713.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 702.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 694.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 691.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 688.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 657.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 656.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 655.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 629.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 625.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 615.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 609.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 609.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 601.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 585.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 577.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 577.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 572.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 557.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 555.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 549.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 524.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 466.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 454.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 409.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 303.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 47.6
FF:10181-103D1 60 years, female 59.0
FF:10159-103A6 76 years, female 36.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 181.5
Samples: 4

Max nTPM: 254.6
Min nTPM: 127.9
Sample A Female 138.3
Sample B Female 205.2
Sample C Male 254.6
Sample D Male 127.9
Ventral spinal cord
nTPM: 164.0
Samples: 4

Max nTPM: 181.3
Min nTPM: 143.7
Sample A Female 143.7
Sample B Female 175.0
Sample C Male 181.3
Sample D Male 156.1

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