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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1734.3 nTPM
GTEx:1734.3 nTPM
FANTOM5:102.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA055060
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1734.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1734.3
Samples: 156

Max nTPM: 4839.5
Min nTPM: 926.0
Std nTPM: 540.3
Median nTPM: 1646.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4839.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 3257.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3186.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3003.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2938.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 2824.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2764.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2674.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2658.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2566.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2560.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2511.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2482.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2477.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2472.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2444.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2372.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2333.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2290.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2278.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2276.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2229.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2193.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2177.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2171.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2168.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2154.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2152.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2147.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2144.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2112.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2091.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2080.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2074.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2058.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2044.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2024.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2021.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2006.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2000.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1994.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1991.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1978.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1965.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1964.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 1960.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1944.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1941.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1936.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1923.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1906.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1898.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1887.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1879.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1870.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1857.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1830.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1826.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1821.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1800.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1796.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1787.5
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1785.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1757.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1736.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1728.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1718.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1715.5
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1713.1
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1701.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1692.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1677.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1676.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1672.8
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1671.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1654.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1651.0
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1648.6
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1644.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1639.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1638.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1633.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1624.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1621.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1619.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1611.8
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1589.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1587.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 1582.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1576.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1550.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1514.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1514.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1513.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1513.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1508.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1483.7
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1480.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1480.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1448.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1446.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1444.2
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1442.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1440.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1437.9
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1430.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1419.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1417.7
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1411.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1393.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1383.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1380.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1377.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1368.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1366.5
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1362.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1341.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1333.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1330.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1326.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1320.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1316.3
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1309.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1306.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1306.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1291.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1289.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1280.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1280.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1277.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1277.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1267.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1262.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1224.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1223.4
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1221.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1211.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1202.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1194.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1194.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1191.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1172.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1168.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1162.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1131.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1121.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1093.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1022.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1014.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 994.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 975.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 972.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 969.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 962.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 955.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 926.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

102.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 102.4
FF:10204-103F6 68 years, female 102.4

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