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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:235.3 nTPM
HPA Brain:141.9 nTPM
GTEx:235.3 nTPM
FANTOM5:55.1 Scaled Tags Per Million
Pig:41.8 nTPM
Mouse:137.6 nTPM
Allen mouse:4.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.9
Sample id Sample description nTPM
Amygdala
nTPM: 113.0
2695 Female, age 67, right hemisphere 140.6
2517 Female, age 94, left hemisphere 132.4
1987 Female, age 91, left hemisphere 125.0
2514 Male, age 75, right hemisphere 91.4
2814 Male, age 76, right hemisphere 75.6
Basal amygdala
nTPM: 139.0
2110 Male, age 80, left hemisphere 153.0
2609 Male, age 75, right hemisphere 148.4
2685 Female, age 94, left hemisphere 148.1
2827 Female, age 67, right hemisphere 141.1
2243 Female, age 91, right hemisphere 136.8
1955 Male, age 76, both hemispheres 106.8
Central amygdala
nTPM: 135.7
2826 Female, age 94, left hemisphere 209.0
2515 Male, age 75, right hemisphere 150.7
2239 Male, age 80, left hemisphere 140.9
2701 Female, age 91, right hemisphere 101.3
1905 Male, age 76, both hemispheres 76.5
Corticomedial amygdala
nTPM: 131.3
2829 Male, age 80, left hemisphere 173.9
2242 Female, age 91, right hemisphere 146.3
2535 Female, age 67, right hemisphere 142.3
2428 Male, age 75, right hemisphere 119.3
2429 Female, age 94, left hemisphere 108.8
2240 Male, age 76, both hemispheres 97.0
Lateral amygdala
nTPM: 141.9
2534 Female, age 94, left hemisphere 189.7
2830 Female, age 67, right hemisphere 156.0
2256 Male, age 80, left hemisphere 155.6
2516 Male, age 75, right hemisphere 133.3
2255 Female, age 91, right hemisphere 115.3
1883 Male, age 76, both hemispheres 101.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 235.3
Samples: 152

Max nTPM: 696.1
Min nTPM: 89.0
Std nTPM: 86.3
Median nTPM: 225.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 696.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 589.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 516.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 493.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 447.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 444.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 406.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 382.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 376.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 367.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 352.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 352.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 344.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 335.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 322.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 321.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 320.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 313.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 304.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 302.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 300.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 300.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 298.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 296.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 296.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 295.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 292.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 287.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 283.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 274.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 272.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 272.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 270.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 270.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 269.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 268.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 266.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 266.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 265.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 265.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 264.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 264.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 262.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 261.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 260.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 256.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 256.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 254.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 253.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 251.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 249.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 248.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 244.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 242.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 241.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 240.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 240.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 238.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 238.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 237.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 237.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 236.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 236.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 235.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 234.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 233.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 232.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 232.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 231.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 229.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 228.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 228.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 228.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 227.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 225.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 225.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 225.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 223.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 223.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 222.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 222.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 222.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 221.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 217.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 214.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 213.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 212.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 209.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 209.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 208.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 207.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 205.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 204.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 202.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 201.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 200.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 197.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 197.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 196.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 194.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 192.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 192.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 192.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 191.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 189.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 189.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 189.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 188.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 186.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 184.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 183.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 183.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 181.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 181.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 180.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 180.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 179.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 175.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 173.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 172.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 172.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 172.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 171.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 169.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 168.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 168.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 166.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 165.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 163.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 160.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 159.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 159.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 158.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 157.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 156.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 155.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 154.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 149.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 148.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 147.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 147.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 138.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 136.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 130.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 129.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 129.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 128.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 125.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 121.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 114.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 91.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 89.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 55.1
FF:10151-102I7 76 years, female 55.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.8
Pig sample Sample description nTPM
Amygdala
nTPM: 41.8
Samples: 4

Max nTPM: 57.4
Min nTPM: 30.9
Sample A Female 57.4
Sample B Female 33.1
Sample C Male 45.7
Sample D Male 30.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 137.6
Samples: 4

Max nTPM: 148.6
Min nTPM: 128.0
Sample A Male 135.9
Sample B Male 137.9
Sample C Female 148.6
Sample D Female 128.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.1
70612727 Antisense, RP_050725_01_C05, Mouse strain C57BL/6J (56 days, male) 6.1
75695661 Antisense, RP_060518_04_C12, Mouse strain C57BL/6J (56 days, male) 2.2

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