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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:193.6 nTPM
FANTOM5:66.1 Scaled Tags Per Million
Pig:76.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042664
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 193.6
Samples: 246

Max nTPM: 365.0
Min nTPM: 54.4
Std nTPM: 49.6
Median nTPM: 186.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 365.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 356.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 339.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 338.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 328.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 327.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 325.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 322.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 307.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 298.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 288.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 281.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 278.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 275.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 273.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 271.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 269.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 268.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 268.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 268.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 265.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 265.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 264.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 259.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 256.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 255.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 254.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 253.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 250.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 249.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 248.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 246.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 245.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 243.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 242.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 238.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 235.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 234.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 234.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 232.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 232.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 231.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 230.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 230.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 229.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 229.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 229.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 228.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 228.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 227.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 227.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 227.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 226.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 226.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 225.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 224.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 224.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 223.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 223.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 223.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 222.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 221.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 220.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 220.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 220.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 220.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 216.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 215.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 215.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 215.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 214.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 214.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 213.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 213.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 213.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 212.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 211.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 210.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 210.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 209.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 209.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 209.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 208.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 207.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 207.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 206.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 205.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 205.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 205.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 204.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 203.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 203.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 202.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 202.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 201.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 200.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 198.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 198.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 197.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 197.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 196.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 195.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 195.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 195.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 195.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 194.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 194.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 194.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 194.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 193.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 193.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 193.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 192.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 191.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 191.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 190.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 189.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 189.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 188.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 188.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 188.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 187.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 187.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 186.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 186.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 186.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 186.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 185.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 185.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 185.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 185.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 184.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 183.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 183.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 182.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 182.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 182.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 182.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 182.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 182.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 181.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 181.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 180.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 180.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 180.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 179.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 179.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 179.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 178.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 178.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 178.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 178.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 177.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 177.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 177.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 177.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 176.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 176.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 176.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 175.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 173.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 173.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 173.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 173.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 171.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 171.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 170.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 170.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 170.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 169.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 168.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 168.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 168.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 168.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 167.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 167.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 166.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 165.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 165.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 165.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 165.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 164.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 160.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 160.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 159.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 159.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 159.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 158.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 158.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 157.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 157.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 157.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 157.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 156.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 156.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 155.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 154.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 153.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 153.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 153.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 153.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 152.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 151.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 151.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 150.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 150.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 149.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 148.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 147.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 147.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 147.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 147.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 146.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 145.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 143.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 142.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 142.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 140.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 138.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 138.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 138.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 137.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 137.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 137.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 135.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 133.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 130.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 130.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 128.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 127.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 127.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 126.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 124.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 124.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 123.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 113.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 113.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 110.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 110.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 106.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 101.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 100.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 98.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 93.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 75.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 54.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

66.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 66.1
FF:10164-103B2 76 years, female 66.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.2
Pig sample Sample description nTPM
Caudate
nTPM: 76.2
Samples: 4

Max nTPM: 95.8
Min nTPM: 57.1
Sample A Female 57.1
Sample B Female 78.2
Sample C Male 95.8
Sample D Male 73.6

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