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  • RPL35A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:725.7 nTPM
HPA Brain:160.4 nTPM
GTEx:725.7 nTPM
FANTOM5:56.5 Scaled Tags Per Million
Pig:213.5 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.4
Sample id Sample description nTPM
Amygdala
nTPM: 160.4
2695 Female, age 67, right hemisphere 186.9
2514 Male, age 75, right hemisphere 174.7
1987 Female, age 91, left hemisphere 154.6
2814 Male, age 76, right hemisphere 147.5
2517 Female, age 94, left hemisphere 138.5
Basal amygdala
nTPM: 125.5
2609 Male, age 75, right hemisphere 139.1
2827 Female, age 67, right hemisphere 136.3
2685 Female, age 94, left hemisphere 133.2
2110 Male, age 80, left hemisphere 126.4
1955 Male, age 76, both hemispheres 120.6
2243 Female, age 91, right hemisphere 97.5
Central amygdala
nTPM: 132.8
2826 Female, age 94, left hemisphere 192.7
2515 Male, age 75, right hemisphere 139.8
1905 Male, age 76, both hemispheres 128.4
2239 Male, age 80, left hemisphere 110.7
2701 Female, age 91, right hemisphere 92.2
Corticomedial amygdala
nTPM: 118.9
2829 Male, age 80, left hemisphere 134.3
2429 Female, age 94, left hemisphere 130.9
2428 Male, age 75, right hemisphere 125.0
2242 Female, age 91, right hemisphere 119.7
2240 Male, age 76, both hemispheres 102.7
2535 Female, age 67, right hemisphere 100.5
Lateral amygdala
nTPM: 132.7
2516 Male, age 75, right hemisphere 177.3
2830 Female, age 67, right hemisphere 161.1
2534 Female, age 94, left hemisphere 157.0
1883 Male, age 76, both hemispheres 121.8
2256 Male, age 80, left hemisphere 93.0
2255 Female, age 91, right hemisphere 85.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

725.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 725.7
Samples: 152

Max nTPM: 2297.0
Min nTPM: 385.8
Std nTPM: 299.2
Median nTPM: 643.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2297.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2165.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1870.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1796.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1638.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1565.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1476.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1204.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1161.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1161.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1035.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1033.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 987.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 981.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 962.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 952.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 944.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 943.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 939.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 934.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 925.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 921.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 916.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 908.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 886.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 873.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 867.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 860.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 852.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 852.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 847.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 837.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 834.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 832.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 831.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 827.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 825.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 813.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 806.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 794.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 791.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 788.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 787.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 786.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 778.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 771.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 771.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 763.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 762.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 759.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 744.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 741.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 736.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 734.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 731.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 731.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 721.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 716.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 713.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 713.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 703.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 691.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 684.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 683.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 682.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 678.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 677.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 672.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 666.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 664.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 663.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 652.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 648.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 645.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 645.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 644.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 641.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 638.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 638.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 638.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 635.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 634.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 625.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 621.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 620.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 619.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 616.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 614.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 610.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 609.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 608.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 608.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 603.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 602.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 601.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 599.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 596.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 595.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 595.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 592.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 592.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 587.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 586.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 585.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 585.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 584.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 584.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 576.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 576.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 573.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 569.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 566.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 563.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 557.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 556.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 555.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 549.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 540.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 540.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 537.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 533.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 531.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 529.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 526.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 526.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 525.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 520.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 510.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 509.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 500.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 493.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 491.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 484.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 484.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 480.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 477.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 476.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 475.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 475.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 473.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 469.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 468.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 452.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 447.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 442.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 442.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 438.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 435.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 425.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 418.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 405.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 385.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

56.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 56.5
FF:10151-102I7 76 years, female 56.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

213.5
Pig sample Sample description nTPM
Amygdala
nTPM: 213.5
Samples: 4

Max nTPM: 274.6
Min nTPM: 122.1
Sample A Female 253.5
Sample B Female 274.6
Sample C Male 203.9
Sample D Male 122.1

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