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RPL35A
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:316.4 nTPM
GTEx:316.4 nTPM
FANTOM5:71.0 Scaled Tags Per Million
Pig:66.1 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

316.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 316.4
Samples: 105

Max nTPM: 518.6
Min nTPM: 215.5
Std nTPM: 56.8
Median nTPM:
491_1 89 years, female 518.6
490_1 67 years, female 446.5
495_1 57 years, female 444.6
414_1 84 years, female 441.5
35_1 74 years, female 412.0
413_1 59 years, female 411.9
17_1 71 years, male 404.9
501_1 88 years, male 402.1
415_1 77 years, female 399.9
307_1 66 years, female 397.0
315_1 62 years, female 392.4
142_1 61 years, female 384.2
379_1 60 years, male 376.9
246_1 77 years, male 374.9
162_1 79 years, female 374.2
139_1 64 years, female 374.0
466_1 57 years, female 372.7
153_1 70 years, female 371.3
126_1 63 years, male 368.3
237_1 82 years, male 361.0
120_1 70 years, female 359.1
384_1 83 years, male 358.3
322_1 76 years, male 355.9
145_1 84 years, male 354.6
308_1 70 years, female 354.2
41_1 94 years, female 353.5
347_1 72 years, male 349.5
321_1 62 years, female 347.3
526_1 61 years, male 346.1
119_1 70 years, female 345.9
89_1 63 years, male 345.1
389_1 86 years, female 342.9
2_1 77 years, female 342.4
375_1 74 years, female 339.3
117_1 61 years, male 338.7
137_1 83 years, male 338.7
499_1 55 years, female 337.5
265_1 87 years, male 336.4
173_1 67 years, male 335.9
4_1 88 years, female 335.2
396_1 62 years, male 334.7
311_1 78 years, male 332.5
42_1 85 years, male 330.0
189_1 76 years, male 326.9
81_1 67 years, male 326.2
6_1 73 years, female 325.9
320_1 89 years, female 322.3
266_1 85 years, male 321.4
404_1 82 years, female 321.1
518_1 75 years, female 316.9
386_1 76 years, male 316.4
218_1 71 years, female 315.7
254_1 77 years, female 313.3
377_1 82 years, female 312.4
217_1 76 years, male 311.2
447_1 81 years, male 309.2
452_1 88 years, female 309.2
18_1 88 years, male 307.8
319_1 81 years, male 307.3
288_1 66 years, female 303.4
394_1 75 years, female 303.4
32_1 67 years, male 303.2
468_1 89 years, male 301.8
376_1 75 years, female 301.6
405_1 91 years, male 301.1
354_1 81 years, female 297.7
109_1 81 years, female 291.8
229_1 69 years, female 289.5
313_1 79 years, female 289.4
355_1 70 years, female 287.4
324_1 76 years, male 285.5
149_1 88 years, male 283.4
177_1 74 years, male 283.1
480_1 63 years, male 279.1
99_1 64 years, male 278.8
316_1 62 years, male 276.0
406_1 79 years, male 272.8
243_1 75 years, male 272.4
295_1 61 years, female 271.7
314_1 67 years, male 271.6
115_1 83 years, male 270.6
503_1 68 years, male 266.0
348_1 84 years, male 265.8
351_1 91 years, male 265.4
335_1 73 years, female 264.9
43_1 64 years, female 264.8
317_1 60 years, male 262.5
425_1 59 years, female 255.1
172_1 72 years, female 254.7
352_1 62 years, male 252.9
349_1 83 years, male 250.3
264_1 73 years, female 249.9
251_1 78 years, male 249.5
506_1 65 years, male 247.8
318_1 68 years, male 247.0
286_1 68 years, female 244.4
291_1 76 years, male 243.2
517_1 88 years, male 240.9
353_1 82 years, female 234.9
350_1 84 years, female 233.0
293_1 68 years, female 225.1
163_1 78 years, male 223.9
9_1 66 years, female 220.9
356_1 87 years, female 219.3
292_1 71 years, male 215.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

71.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 71.0
FF:10030-101E3 24-65 years, mixed 71.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.1
Pig sample Sample description nTPM
Retina
nTPM: 66.1
Samples: 4

Max nTPM: 72.5
Min nTPM: 60.0
Sample A Female 61.5
Sample B Female 72.5
Sample C Male 70.3
Sample D Male 60.0

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