MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:179.0 nTPM
HPA Brain:75.3 nTPM
GTEx:179.0 nTPM
FANTOM5:125.0 Scaled Tags Per Million
Pig:350.2 nTPM
Mouse:355.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 75.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.1
2019 Male, age 18, unknown 84.6
2586 Male, age 75, left hemisphere 66.3
1827 Male, age 72, unknown 63.0
2411 Female, age 72, unknown 58.8
1870 Female, age 42, unknown 57.2
2219 Male, age 76, both hemispheres 55.6
2828 Female, age 72, unknown 54.7
1833 Male, age 53, unknown 53.3
1830 Male, age 51, unknown 49.7
2666 Male, age 74, left hemisphere 47.5
Dorsal raphe nucleus
nTPM: 65.8
2298 Female, age 72, unknown 76.9
1828 Male, age 53, unknown 71.6
2047 Male, age 72, unknown 67.0
2750 Male, age 76, both hemispheres 59.4
2016 Female, age 72, unknown 54.0
Inferior colliculus
nTPM: 68.9
1890 Male, age 53, unknown 81.5
2097 Female, age 72, unknown 75.5
1848 Female, age 42, unknown 63.5
2849 Male, age 72, unknown 55.2
Median raphe nucleus
nTPM: 59.6
2220 Male, age 76, midline 59.6
Periaquaductal grey, anterior
nTPM: 61.8
1947 Male, age 18, unknown 65.8
1795 Male, age 51, unknown 61.3
2502 Female, age 75, unknown 58.2
Periaquaductal grey, dorsal
nTPM: 55.4
2850 Male, age 76, both hemispheres 60.5
1831 Male, age 72, unknown 56.5
1840 Male, age 53, unknown 54.5
2464 Female, age 72, unknown 50.1
Periaquaductal grey, lateral
nTPM: 55.5
2272 Male, age 74, both hemispheres 62.5
2140 Male, age 76, both hemispheres 53.0
2053 Male, age 18, unknown 51.1
Pretectal area
nTPM: 74.2
1817 Female, age 42, unknown 101.8
2007 Male, age 72, unknown 99.2
1816 Male, age 51, unknown 89.6
1944 Female, age 72, unknown 88.7
2667 Female, age 75, unknown 74.2
1815 Male, age 53, unknown 72.3
2273 Male, age 74, both hemispheres 64.4
2224 Female, age 72, unknown 64.3
2316 Male, age 76, right hemisphere 56.4
2407 Male, age 75, both hemispheres 56.3
2825 Male, age 18, unknown 49.5
Red nucleus
nTPM: 69.9
1821 Female, age 72, unknown 93.5
2725 Female, age 75, unknown 79.2
2785 Male, age 18, unknown 78.5
2503 Female, age 72, unknown 71.3
1865 Male, age 51, unknown 70.6
2227 Male, age 72, unknown 68.9
2769 Male, age 72, unknown 68.5
1954 Female, age 42, unknown 68.0
2823 Male, age 76, right hemisphere 66.1
1904 Male, age 53, unknown 64.4
2588 Male, age 74, left hemisphere 59.1
2584 Male, age 75, left hemisphere 50.7
Substantia nigra
nTPM: 75.3
1916 Female, age 42, unknown 99.9
1851 Male, age 51, unknown 87.6
1889 Female, age 72, unknown 85.6
2409 Female, age 72, unknown 81.8
1941 Male, age 53, unknown 80.8
2241 Male, age 72, unknown 68.0
2699 Male, age 18, unknown 67.4
2665 Male, age 74, both hemispheres 67.3
2590 Female, age 75, unknown 60.8
2583 Male, age 75, right hemisphere 53.3
Superior colliculus
nTPM: 62.9
2087 Female, age 72, unknown 71.2
2587 Male, age 74, left hemisphere 70.9
2668 Female, age 75, unknown 68.6
1796 Male, age 53, unknown 67.6
1895 Male, age 76, right hemisphere 66.2
2261 Male, age 18, unknown 61.9
1913 Female, age 42, unknown 59.6
2664 Male, age 75, both hemispheres 56.6
1995 Male, age 72, unknown 54.8
1839 Male, age 51, unknown 51.6
Ventral tegmental area
nTPM: 66.7
1915 Female, age 42, unknown 79.8
2410 Female, age 72, unknown 75.6
2218 Male, age 76, both hemispheres 69.2
1942 Male, age 51, unknown 62.9
2223 Female, age 72, unknown 61.7
2021 Male, age 53, unknown 50.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 179.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 179.0
Samples: 139

Max nTPM: 320.2
Min nTPM: 78.7
Std nTPM: 47.1
Median nTPM: 174.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 320.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 313.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 309.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 293.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 286.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 277.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 270.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 266.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 263.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 261.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 260.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 125.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.0
FF:10158-103A5 76 years, female 125.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 350.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 276.8
Samples: 4

Max nTPM: 423.2
Min nTPM: 186.4
Sample A Female 423.2
Sample B Female 238.1
Sample C Male 259.3
Sample D Male 186.4
Midbrain
nTPM: 280.9
Samples: 4

Max nTPM: 300.9
Min nTPM: 253.5
Sample A Female 284.7
Sample B Female 284.5
Sample C Male 300.9
Sample D Male 253.5
Periaqueductal gray
nTPM: 214.0
Samples: 3

Max nTPM: 225.2
Min nTPM: 201.1
Sample B Female 215.6
Sample C Male 225.2
Sample D Male 201.1
Superior colliculi
nTPM: 350.2
Samples: 4

Max nTPM: 446.8
Min nTPM: 281.8
Sample A Female 446.8
Sample B Female 282.3
Sample C Male 389.7
Sample D Male 281.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 355.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 355.1
Samples: 4

Max nTPM: 423.0
Min nTPM: 288.5
Sample A Male 423.0
Sample B Male 316.3
Sample C Female 288.5
Sample D Female 392.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71763957 Antisense, RP_050921_02_H08, Mouse strain C57BL/6J (56 days, male) 0.2

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