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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:112.9 nTPM
HPA Brain:82.7 nTPM
GTEx:112.9 nTPM
FANTOM5:139.8 Scaled Tags Per Million
Pig:298.5 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 71.0
1981 Female, age 72, midline 93.1
2048 Male, age 55, midline 68.4
2194 Female, age 79, both hemispheres 67.0
2565 Male, age 75, midline 66.7
2816 Male, age 47, midline 60.1
Cervical spinal cord, dorsal horn
nTPM: 82.7
2173 Female, age 72, unknown 99.7
2069 Male, age 47, both hemispheres 88.1
2721 Male, age 90, both hemispheres 86.1
2296 Male, age 66, both hemispheres 81.1
2297 Male, age 75, both hemispheres 76.9
1877 Male, age 55, unknown 64.5
Cervical spinal cord, ventral horn
nTPM: 72.6
2098 Female, age 72, unknown 100.8
2068 Male, age 55, unknown 70.2
2480 Male, age 75, both hemispheres 69.9
2295 Male, age 66, both hemispheres 68.9
2809 Male, age 90, both hemispheres 68.0
2820 Female, age 79, both hemispheres 57.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 112.9
Samples: 159

Max nTPM: 198.9
Min nTPM: 49.3
Std nTPM: 27.5
Median nTPM: 108.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 198.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 181.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 178.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 177.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 176.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 174.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 170.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 169.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 167.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 166.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 165.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 155.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 155.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 154.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 151.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 151.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 150.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 148.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 148.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 146.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 144.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 144.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 144.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 142.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 140.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 139.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 138.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 138.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 138.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 138.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 137.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 137.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 137.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 136.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 136.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 136.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 134.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 132.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 132.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 130.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 130.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 129.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 128.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 127.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 127.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 127.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 126.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 126.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 126.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 126.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 123.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 122.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 121.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 121.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 120.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 119.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 119.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 117.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 117.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 116.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 115.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 115.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 115.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 114.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 114.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 113.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 112.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 112.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 112.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 111.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 110.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 110.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 109.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 109.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 109.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 109.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 109.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 109.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 108.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 108.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 108.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 107.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 107.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 107.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 107.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 107.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 106.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 104.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 104.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 104.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 101.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 101.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 101.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 101.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 101.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 100.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 100.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 100.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 100.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 99.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 98.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 98.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 97.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 97.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 97.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 96.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 96.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 96.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 96.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 96.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 96.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 96.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 95.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 95.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 94.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 94.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 94.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 94.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 94.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 93.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 93.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 93.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 92.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 92.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 92.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 91.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 91.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 90.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 90.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 90.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 89.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 89.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 89.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 88.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 87.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 87.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 86.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 85.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 85.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 84.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 84.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 82.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 82.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 82.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 81.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 81.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 79.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 79.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 77.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 77.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 75.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 75.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 74.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 72.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 71.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 63.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 62.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 60.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 49.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

139.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 139.8
FF:10181-103D1 60 years, female 166.4
FF:10159-103A6 76 years, female 113.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

298.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 225.5
Samples: 4

Max nTPM: 235.2
Min nTPM: 215.0
Sample A Female 233.7
Sample B Female 215.0
Sample C Male 235.2
Sample D Male 218.0
Ventral spinal cord
nTPM: 298.6
Samples: 4

Max nTPM: 341.2
Min nTPM: 226.4
Sample A Female 286.3
Sample B Female 341.2
Sample C Male 340.3
Sample D Male 226.4

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