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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:138.8 nTPM
FANTOM5:75.4 Scaled Tags Per Million
Pig:17.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB002607
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.8
Samples: 246

Max nTPM: 767.4
Min nTPM: 14.4
Std nTPM: 108.4
Median nTPM: 105.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 767.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 636.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 586.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 504.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 462.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 440.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 432.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 401.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 400.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 397.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 395.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 394.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 369.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 358.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 354.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 340.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 328.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 320.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 303.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 292.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 268.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 264.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 259.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 258.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 258.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 254.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 247.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 244.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 243.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 242.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 240.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 234.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 233.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 230.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 230.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 229.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 229.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 227.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 220.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 219.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 218.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 216.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 216.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 207.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 204.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 199.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 197.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 196.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 196.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 194.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 191.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 190.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 186.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 185.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 183.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 183.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 181.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 181.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 180.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 180.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 176.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 175.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 174.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 174.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 173.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 173.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 170.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 169.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 169.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 167.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 165.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 159.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 158.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 157.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 156.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 152.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 151.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 150.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 148.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 148.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 147.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 145.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 143.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 142.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 142.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 140.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 140.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 139.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 138.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 138.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 137.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 137.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 135.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 134.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 133.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 129.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 128.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 126.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 124.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 123.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 122.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 122.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 122.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 121.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 119.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 119.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 119.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 117.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 116.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 116.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 115.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 115.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 114.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 113.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 112.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 109.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 109.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 109.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 107.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 106.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 106.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 106.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 106.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 104.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 104.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 103.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 103.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 102.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 101.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 100.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 100.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 100.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 99.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 98.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 97.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 97.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 96.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 94.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 92.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 92.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 92.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 91.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 90.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 88.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 88.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 88.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 87.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 87.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 87.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 85.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 85.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 85.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 84.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 83.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 83.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 82.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 82.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 81.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 80.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 80.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 80.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 79.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 79.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 78.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 77.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 77.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 76.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 76.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 76.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 75.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 75.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 74.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 73.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 73.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 71.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 70.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 70.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 69.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 69.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 69.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 68.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 68.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 68.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 68.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 67.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 67.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 67.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 67.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 66.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 66.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 66.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 66.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 65.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 65.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 65.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 65.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 65.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 64.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 63.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 61.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 61.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 60.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 60.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 59.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 58.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 58.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 58.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 58.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 57.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 57.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 57.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 55.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 54.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 53.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 52.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 51.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 50.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 48.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 48.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 48.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 48.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 48.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 48.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 47.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 47.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 46.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 45.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 45.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 43.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 42.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 41.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 41.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 41.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 39.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 37.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 36.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 36.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 35.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 33.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 29.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 27.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 23.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 21.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 21.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 20.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 14.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 75.4
FF:10164-103B2 76 years, female 75.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.1
Pig sample Sample description nTPM
Caudate
nTPM: 17.1
Samples: 4

Max nTPM: 19.5
Min nTPM: 12.8
Sample A Female 12.8
Sample B Female 19.5
Sample C Male 17.0
Sample D Male 18.9

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