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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:174.8 nTPM
HPA Brain:131.3 nTPM
GTEx:174.8 nTPM
FANTOM5:54.5 Scaled Tags Per Million
Pig:39.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 79.8
2565 Male, age 75, midline 130.3
2816 Male, age 47, midline 77.4
1981 Female, age 72, midline 75.0
2194 Female, age 79, both hemispheres 69.5
2048 Male, age 55, midline 46.8
Cervical spinal cord, dorsal horn
nTPM: 55.6
2297 Male, age 75, both hemispheres 87.7
2173 Female, age 72, unknown 66.7
2296 Male, age 66, both hemispheres 47.9
1877 Male, age 55, unknown 47.5
2069 Male, age 47, both hemispheres 43.5
2721 Male, age 90, both hemispheres 40.5
Cervical spinal cord, ventral horn
nTPM: 131.3
2480 Male, age 75, both hemispheres 211.4
2809 Male, age 90, both hemispheres 173.0
2098 Female, age 72, unknown 113.4
2068 Male, age 55, unknown 109.2
2295 Male, age 66, both hemispheres 108.7
2820 Female, age 79, both hemispheres 72.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 174.8
Samples: 159

Max nTPM: 516.1
Min nTPM: 43.9
Std nTPM: 100.5
Median nTPM: 151.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 516.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 509.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 462.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 397.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 397.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 394.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 392.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 388.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 380.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 369.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 362.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 362.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 351.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 339.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 321.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 317.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 310.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 306.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 300.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 289.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 286.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 286.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 283.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 282.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 282.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 276.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 274.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 273.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 270.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 269.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 266.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 259.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 256.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 254.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 242.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 234.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 232.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 232.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 231.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 228.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 226.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 226.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 225.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 225.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 223.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 219.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 212.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 212.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 208.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 207.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 205.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 205.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 203.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 197.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 197.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 197.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 194.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 190.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 188.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 186.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 186.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 185.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 183.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 175.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 174.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 171.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 168.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 167.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 166.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 165.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 164.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 163.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 161.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 159.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 157.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 156.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 155.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 155.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 154.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 151.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 150.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 149.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 147.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 145.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 144.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 144.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 143.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 141.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 141.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 138.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 136.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 134.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 132.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 131.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 128.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 127.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 122.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 118.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 117.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 117.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 114.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 113.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 112.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 111.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 110.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 109.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 108.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 106.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 106.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 105.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 105.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 104.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 101.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 99.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 99.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 99.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 98.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 97.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 96.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 96.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 96.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 95.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 95.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 93.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 92.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 90.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 89.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 88.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 88.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 87.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 85.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 82.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 81.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 80.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 80.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 78.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 75.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 74.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 72.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 71.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 68.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 68.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 68.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 67.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 66.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 64.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 63.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 63.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 58.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 58.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 56.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 56.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 56.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 53.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 49.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 48.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 47.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 44.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 43.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

54.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 54.5
FF:10181-103D1 60 years, female 56.4
FF:10159-103A6 76 years, female 52.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 39.2
Samples: 4

Max nTPM: 53.5
Min nTPM: 26.6
Sample A Female 29.3
Sample B Female 47.5
Sample C Male 53.5
Sample D Male 26.6
Ventral spinal cord
nTPM: 35.7
Samples: 4

Max nTPM: 42.1
Min nTPM: 28.8
Sample A Female 28.8
Sample B Female 42.1
Sample C Male 35.5
Sample D Male 36.4

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