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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:371.5 nTPM
GTEx:379.1 nTPM
FANTOM5:200.9 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA029095Antibody HPA063885Antibody CAB016120
Glial cells Not detectedNot detectedNot detected
Neuronal cells LowNot detectedLow






HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

371.5
Sample id Sample description nTPM
Hippocampus
nTPM: 371.5
2621 Female, age 67, right hemisphere 512.0
2148 Female, age 91, left hemisphere 432.4
2529 Female, age 94, left hemisphere 398.7
1911 Female, age 85, right hemisphere 348.1
1898 Male, age 80, left hemisphere 301.6
1855 Male, age 76, left hemisphere 236.3

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

379.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 379.1
Samples: 197

Max nTPM: 1148.8
Min nTPM: 21.7
Std nTPM: 236.8
Median nTPM: 346.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1148.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1050.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1021.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 984.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 917.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 916.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 914.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 890.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 852.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 838.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 818.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 811.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 802.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 799.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 799.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 795.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 788.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 775.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 757.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 732.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 724.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 710.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 709.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 688.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 683.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 658.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 656.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 654.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 618.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 602.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 596.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 596.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 595.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 579.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 576.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 569.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 568.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 559.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 559.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 557.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 557.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 553.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 548.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 542.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 540.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 539.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 532.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 522.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 510.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 510.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 503.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 500.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 499.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 498.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 495.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 493.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 492.4
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 492.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 491.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 488.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 478.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 474.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 471.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 469.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 466.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 464.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 446.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 436.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 434.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 417.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 417.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 415.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 411.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 407.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 406.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 405.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 396.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 393.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 392.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 390.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 389.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 386.9
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 382.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 378.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 378.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 376.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 376.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 375.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 375.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 375.0
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 369.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 368.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 368.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 367.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 366.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 363.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 357.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 347.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 346.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 346.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 345.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 340.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 337.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 336.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 336.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 331.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 326.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 320.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 314.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 310.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 310.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 309.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 309.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 306.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 303.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 302.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 297.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 295.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 293.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 290.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 290.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 285.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 280.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 276.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 276.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 268.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 268.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 267.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 264.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 253.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 242.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 242.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 240.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 239.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 232.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 229.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 229.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 226.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 221.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 220.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 219.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 214.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 208.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 203.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 199.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 196.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 194.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 191.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 190.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 189.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 185.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 182.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 178.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 176.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 174.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 169.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 167.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 167.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 167.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 161.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 160.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 158.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 156.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 150.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 147.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 146.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 144.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 141.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 119.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 109.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 104.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 104.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 97.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 97.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 96.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 89.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 89.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 87.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 87.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 86.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 85.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 83.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 83.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 83.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 75.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 73.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 69.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 68.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 66.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 55.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 54.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 53.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 40.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 35.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 31.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 25.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 21.7
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

200.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 200.9
FF:10153-102I9 76 years, female 213.9
FF:10169-103B7 60 years, female 187.9

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