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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:187.0 nTPM
HPA Brain:75.5 nTPM
GTEx:187.0 nTPM
FANTOM5:92.6 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.5
Sample id Sample description nTPM
Amygdala
nTPM: 59.5
2514 Male, age 75, right hemisphere 65.0
2814 Male, age 76, right hemisphere 63.1
2695 Female, age 67, right hemisphere 58.5
2517 Female, age 94, left hemisphere 56.1
1987 Female, age 91, left hemisphere 54.6
Basal amygdala
nTPM: 65.5
2243 Female, age 91, right hemisphere 83.3
2685 Female, age 94, left hemisphere 72.0
2827 Female, age 67, right hemisphere 64.3
1955 Male, age 76, both hemispheres 61.4
2609 Male, age 75, right hemisphere 57.6
2110 Male, age 80, left hemisphere 54.2
Central amygdala
nTPM: 65.5
2701 Female, age 91, right hemisphere 88.6
2239 Male, age 80, left hemisphere 78.5
1905 Male, age 76, both hemispheres 58.3
2515 Male, age 75, right hemisphere 56.0
2826 Female, age 94, left hemisphere 46.3
Corticomedial amygdala
nTPM: 75.5
2535 Female, age 67, right hemisphere 103.0
2242 Female, age 91, right hemisphere 85.6
2240 Male, age 76, both hemispheres 83.7
2429 Female, age 94, left hemisphere 69.0
2829 Male, age 80, left hemisphere 65.9
2428 Male, age 75, right hemisphere 45.9
Lateral amygdala
nTPM: 57.1
2255 Female, age 91, right hemisphere 73.2
1883 Male, age 76, both hemispheres 64.0
2256 Male, age 80, left hemisphere 60.5
2534 Female, age 94, left hemisphere 58.1
2516 Male, age 75, right hemisphere 49.5
2830 Female, age 67, right hemisphere 37.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 187.0
Samples: 152

Max nTPM: 395.8
Min nTPM: 28.7
Std nTPM: 55.5
Median nTPM: 179.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 395.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 374.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 340.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 326.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 318.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 311.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 278.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 275.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 272.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 272.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 272.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 272.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 266.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 264.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 261.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 258.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 252.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 251.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 247.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 246.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 246.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 244.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 241.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 235.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 235.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 234.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 233.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 233.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 231.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 228.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 227.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 225.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 224.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 224.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 222.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 219.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 218.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 216.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 216.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 215.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 214.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 211.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 211.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 210.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 210.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 209.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 208.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 206.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 204.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 203.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 199.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 199.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 198.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 197.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 197.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 196.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 195.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 195.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 193.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 193.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 193.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 192.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 192.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 190.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 190.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 190.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 189.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 188.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 186.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 184.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 183.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 181.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 181.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 180.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 180.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 179.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 178.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 178.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 177.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 176.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 174.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 174.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 174.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 172.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 172.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 171.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 170.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 170.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 170.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 170.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 170.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 168.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 168.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 167.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 166.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 166.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 165.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 165.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 162.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 162.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 161.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 160.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 159.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 156.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 156.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 156.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 155.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 154.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 152.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 151.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 151.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 150.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 150.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 150.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 150.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 150.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 149.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 149.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 149.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 149.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 148.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 147.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 147.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 144.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 143.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 142.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 140.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 138.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 138.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 136.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 135.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 134.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 133.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 131.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 131.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 129.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 127.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 124.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 123.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 121.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 118.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 116.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 114.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 114.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 113.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 111.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 111.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 109.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 83.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 81.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 67.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 28.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 92.6
FF:10151-102I7 76 years, female 92.6

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