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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:94.2 nTPM
HPA Brain:59.4 nTPM
GTEx:94.2 nTPM
FANTOM5:86.9 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 55.9
2565 Male, age 75, midline 68.8
2194 Female, age 79, both hemispheres 64.3
2816 Male, age 47, midline 52.0
2048 Male, age 55, midline 48.0
1981 Female, age 72, midline 46.5
Cervical spinal cord, dorsal horn
nTPM: 59.4
2721 Male, age 90, both hemispheres 105.8
2297 Male, age 75, both hemispheres 71.8
1877 Male, age 55, unknown 55.7
2069 Male, age 47, both hemispheres 48.8
2173 Female, age 72, unknown 40.4
2296 Male, age 66, both hemispheres 33.9
Cervical spinal cord, ventral horn
nTPM: 51.1
2480 Male, age 75, both hemispheres 61.4
2820 Female, age 79, both hemispheres 58.2
2068 Male, age 55, unknown 58.0
2295 Male, age 66, both hemispheres 50.8
2809 Male, age 90, both hemispheres 43.9
2098 Female, age 72, unknown 34.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 94.2
Samples: 159

Max nTPM: 194.0
Min nTPM: 33.8
Std nTPM: 33.2
Median nTPM: 86.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 194.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 185.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 169.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 166.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 165.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 165.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 163.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 154.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 150.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 149.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 146.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 145.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 142.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 142.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 142.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 141.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 141.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 140.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 137.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 136.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 136.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 135.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 133.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 133.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 132.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 128.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 125.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 125.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 124.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 124.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 124.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 123.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 123.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 122.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 121.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 121.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 121.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 120.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 119.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 116.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 116.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 116.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 115.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 115.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 114.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 113.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 113.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 113.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 113.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 111.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 111.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 110.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 106.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 105.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 105.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 104.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 104.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 103.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 102.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 101.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 101.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 101.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 101.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 100.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 100.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 97.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 97.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 94.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 93.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 93.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 91.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 91.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 91.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 91.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 90.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 90.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 88.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 87.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 87.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 86.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 86.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 85.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 84.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 84.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 84.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 84.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 83.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 83.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 82.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 81.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 81.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 80.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 80.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 80.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 80.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 80.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 79.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 79.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 78.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 77.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 77.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 76.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 76.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 76.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 75.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 75.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 75.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 73.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 73.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 73.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 72.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 72.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 72.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 72.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 72.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 70.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 70.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 69.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 69.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 68.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 68.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 68.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 68.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 68.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 67.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 67.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 64.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 64.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 64.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 64.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 64.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 62.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 61.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 61.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 60.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 60.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 60.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 58.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 58.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 58.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 58.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 57.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 57.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 56.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 56.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 56.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 53.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 52.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 52.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 47.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 46.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 46.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 45.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 45.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 41.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 37.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 37.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 35.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 33.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 86.9
FF:10181-103D1 60 years, female 112.2
FF:10159-103A6 76 years, female 61.6

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