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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:460.4 nTPM
HPA Brain:393.4 nTPM
GTEx:460.4 nTPM
FANTOM5:520.8 Scaled Tags Per Million
Pig:340.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

393.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 280.3
2565 Male, age 75, midline 316.2
2048 Male, age 55, midline 312.9
1981 Female, age 72, midline 280.7
2194 Female, age 79, both hemispheres 247.5
2816 Male, age 47, midline 244.3
Cervical spinal cord, dorsal horn
nTPM: 250.8
2173 Female, age 72, unknown 343.2
2296 Male, age 66, both hemispheres 281.6
2069 Male, age 47, both hemispheres 278.1
1877 Male, age 55, unknown 248.9
2297 Male, age 75, both hemispheres 178.7
2721 Male, age 90, both hemispheres 174.5
Cervical spinal cord, ventral horn
nTPM: 393.4
2480 Male, age 75, both hemispheres 621.0
2809 Male, age 90, both hemispheres 484.2
2295 Male, age 66, both hemispheres 404.7
2098 Female, age 72, unknown 350.5
2068 Male, age 55, unknown 268.1
2820 Female, age 79, both hemispheres 232.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

460.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 460.4
Samples: 159

Max nTPM: 1084.4
Min nTPM: 195.4
Std nTPM: 154.1
Median nTPM: 424.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1084.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 923.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 894.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 870.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 862.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 789.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 757.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 748.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 739.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 736.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 728.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 721.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 720.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 706.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 695.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 688.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 656.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 643.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 642.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 625.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 625.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 623.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 621.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 617.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 598.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 597.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 595.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 593.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 592.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 589.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 584.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 583.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 570.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 566.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 557.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 555.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 553.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 549.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 539.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 538.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 536.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 532.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 531.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 526.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 520.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 519.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 513.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 512.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 511.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 510.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 508.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 507.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 507.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 505.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 504.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 500.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 498.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 497.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 491.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 491.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 490.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 490.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 488.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 488.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 484.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 481.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 478.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 470.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 467.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 463.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 460.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 444.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 443.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 440.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 434.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 434.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 431.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 431.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 427.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 424.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 415.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 413.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 413.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 410.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 409.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 408.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 408.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 406.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 405.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 402.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 401.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 399.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 398.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 391.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 391.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 390.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 386.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 382.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 380.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 379.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 379.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 377.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 374.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 374.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 371.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 369.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 369.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 369.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 368.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 367.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 361.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 359.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 355.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 351.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 349.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 349.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 349.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 348.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 345.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 345.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 344.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 343.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 341.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 339.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 338.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 336.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 332.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 332.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 331.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 329.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 328.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 328.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 328.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 328.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 328.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 327.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 325.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 323.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 317.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 310.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 304.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 304.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 300.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 297.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 295.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 290.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 280.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 274.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 273.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 273.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 260.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 259.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 253.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 253.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 245.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 244.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 233.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 228.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 195.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

520.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 520.8
FF:10181-103D1 60 years, female 575.9
FF:10159-103A6 76 years, female 465.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

340.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 307.2
Samples: 4

Max nTPM: 378.5
Min nTPM: 255.9
Sample A Female 255.9
Sample B Female 378.5
Sample C Male 324.9
Sample D Male 269.6
Ventral spinal cord
nTPM: 340.4
Samples: 4

Max nTPM: 429.7
Min nTPM: 274.6
Sample A Female 317.2
Sample B Female 340.2
Sample C Male 274.6
Sample D Male 429.7

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