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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:274.3 nTPM
GTEx:274.3 nTPM
FANTOM5:680.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA028861
Squamous epithelial cells High



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

274.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 274.3
Samples: 156

Max nTPM: 574.6
Min nTPM: 147.2
Std nTPM: 88.7
Median nTPM: 250.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 574.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 560.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 534.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 533.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 527.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 517.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 516.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 483.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 459.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 456.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 431.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 429.7
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 428.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 405.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 401.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 394.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 388.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 385.2
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 375.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 360.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 358.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 353.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 351.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 346.5
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 344.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 344.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 340.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 339.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 336.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 334.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 332.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 327.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 320.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 320.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 317.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 317.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 313.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 313.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 308.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 307.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 305.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 303.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 302.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 302.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 302.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 300.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 299.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 299.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 298.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 296.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 295.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 291.9
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 286.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 285.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 281.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 281.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 280.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 278.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 278.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 277.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 276.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 272.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 270.8
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 269.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 267.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 267.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 266.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 265.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 264.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 264.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 260.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 257.9
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 257.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 257.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 256.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 255.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 253.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 251.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 250.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 250.4
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 249.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 247.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 246.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 246.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 245.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 244.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 243.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 243.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 243.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 242.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 240.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 240.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 240.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 240.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 239.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 238.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 238.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 237.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 237.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 236.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 236.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 233.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 232.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 230.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 228.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 225.6
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 224.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 224.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 223.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 220.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 219.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 218.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 217.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 217.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 217.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 216.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 215.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 214.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 213.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 210.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 208.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 208.1
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 207.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 206.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 206.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 205.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 203.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 202.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 202.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 200.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 200.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 200.3
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 198.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 196.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 193.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 190.4
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 188.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 184.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 182.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 182.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 180.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 179.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 179.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 177.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 177.3
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 176.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 168.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 167.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 167.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 165.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 161.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 158.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 152.9
GTEX-QCQG-1226-SM-48U23 50-59 years, female 152.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 148.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 147.2
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

680.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 680.2
FF:10204-103F6 68 years, female 680.2

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