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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:363.8 nTPM
HPA Brain:271.1 nTPM
GTEx:363.8 nTPM
FANTOM5:501.7 Scaled Tags Per Million
Pig:457.7 nTPM
Mouse:717.1 nTPM
Allen mouse:15.8 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

271.1
Sample id Sample description nTPM
Amygdala
nTPM: 271.1
2695 Female, age 67, right hemisphere 371.2
2814 Male, age 76, right hemisphere 321.2
2517 Female, age 94, left hemisphere 237.2
1987 Female, age 91, left hemisphere 232.6
2514 Male, age 75, right hemisphere 193.2
Basal amygdala
nTPM: 204.7
2110 Male, age 80, left hemisphere 266.1
2609 Male, age 75, right hemisphere 261.3
2243 Female, age 91, right hemisphere 204.8
1955 Male, age 76, both hemispheres 199.7
2827 Female, age 67, right hemisphere 150.3
2685 Female, age 94, left hemisphere 146.2
Central amygdala
nTPM: 271.1
2515 Male, age 75, right hemisphere 333.6
1905 Male, age 76, both hemispheres 285.0
2701 Female, age 91, right hemisphere 263.0
2826 Female, age 94, left hemisphere 241.8
2239 Male, age 80, left hemisphere 232.1
Corticomedial amygdala
nTPM: 177.7
2829 Male, age 80, left hemisphere 271.9
2428 Male, age 75, right hemisphere 230.0
2429 Female, age 94, left hemisphere 154.5
2535 Female, age 67, right hemisphere 151.0
2240 Male, age 76, both hemispheres 150.1
2242 Female, age 91, right hemisphere 108.7
Lateral amygdala
nTPM: 212.1
2516 Male, age 75, right hemisphere 239.0
2255 Female, age 91, right hemisphere 230.1
2256 Male, age 80, left hemisphere 228.8
1883 Male, age 76, both hemispheres 227.2
2830 Female, age 67, right hemisphere 176.8
2534 Female, age 94, left hemisphere 170.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

363.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 363.8
Samples: 152

Max nTPM: 2102.7
Min nTPM: 58.6
Std nTPM: 346.3
Median nTPM: 255.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2102.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1957.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1816.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1513.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1292.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1280.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1252.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1068.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1001.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 922.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 855.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 855.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 831.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 780.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 714.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 706.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 695.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 680.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 664.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 644.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 640.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 588.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 587.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 564.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 561.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 556.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 548.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 503.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 499.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 499.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 487.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 483.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 460.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 460.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 455.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 455.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 449.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 445.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 434.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 429.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 424.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 422.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 421.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 418.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 415.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 410.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 374.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 372.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 365.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 364.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 357.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 353.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 332.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 321.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 321.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 304.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 299.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 299.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 295.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 294.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 291.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 289.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 288.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 285.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 282.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 279.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 277.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 277.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 270.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 267.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 267.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 265.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 264.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 260.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 258.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 257.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 254.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 253.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 245.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 242.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 239.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 235.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 235.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 230.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 230.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 214.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 213.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 211.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 202.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 200.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 193.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 191.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 191.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 190.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 189.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 189.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 184.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 182.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 179.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 177.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 175.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 174.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 173.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 172.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 171.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 170.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 169.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 168.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 168.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 168.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 167.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 165.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 163.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 156.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 156.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 154.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 152.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 152.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 152.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 145.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 144.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 142.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 140.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 138.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 138.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 138.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 135.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 134.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 133.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 133.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 133.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 131.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 130.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 125.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 125.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 121.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 117.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 111.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 111.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 107.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 106.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 101.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 98.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 97.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 97.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 96.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 86.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 81.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 80.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 69.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 68.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 58.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

501.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 501.7
FF:10151-102I7 76 years, female 501.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

457.7
Pig sample Sample description nTPM
Amygdala
nTPM: 457.7
Samples: 4

Max nTPM: 632.9
Min nTPM: 292.2
Sample A Female 426.0
Sample B Female 632.9
Sample C Male 479.6
Sample D Male 292.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

717.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 717.1
Samples: 4

Max nTPM: 1005.3
Min nTPM: 547.2
Sample A Male 584.2
Sample B Male 547.2
Sample C Female 1005.3
Sample D Female 731.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.8
67767450 Antisense, RP_040916_01_H10, Mouse strain C57BL/6J (56 days, male) 15.8

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