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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:220.4 nTPM
HPA Brain:139.1 nTPM
GTEx:220.4 nTPM
FANTOM5:149.5 Scaled Tags Per Million
Pig:208.8 nTPM
Mouse:382.6 nTPM
Allen mouse:18.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.1
Sample id Sample description nTPM
Amygdala
nTPM: 139.1
2514 Male, age 75, right hemisphere 161.7
1987 Female, age 91, left hemisphere 148.8
2814 Male, age 76, right hemisphere 138.6
2517 Female, age 94, left hemisphere 133.3
2695 Female, age 67, right hemisphere 113.1
Basal amygdala
nTPM: 115.3
1955 Male, age 76, both hemispheres 129.2
2110 Male, age 80, left hemisphere 128.3
2609 Male, age 75, right hemisphere 124.3
2243 Female, age 91, right hemisphere 119.3
2685 Female, age 94, left hemisphere 104.9
2827 Female, age 67, right hemisphere 86.0
Central amygdala
nTPM: 125.9
2239 Male, age 80, left hemisphere 138.1
2515 Male, age 75, right hemisphere 132.2
1905 Male, age 76, both hemispheres 127.2
2826 Female, age 94, left hemisphere 119.8
2701 Female, age 91, right hemisphere 112.2
Corticomedial amygdala
nTPM: 136.3
2829 Male, age 80, left hemisphere 155.7
2428 Male, age 75, right hemisphere 145.6
2242 Female, age 91, right hemisphere 144.4
2429 Female, age 94, left hemisphere 142.4
2240 Male, age 76, both hemispheres 133.8
2535 Female, age 67, right hemisphere 96.0
Lateral amygdala
nTPM: 114.7
2516 Male, age 75, right hemisphere 139.4
1883 Male, age 76, both hemispheres 131.3
2534 Female, age 94, left hemisphere 125.6
2256 Male, age 80, left hemisphere 104.4
2255 Female, age 91, right hemisphere 99.9
2830 Female, age 67, right hemisphere 87.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 220.4
Samples: 152

Max nTPM: 450.4
Min nTPM: 126.8
Std nTPM: 57.9
Median nTPM: 207.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 450.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 444.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 417.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 405.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 395.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 392.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 323.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 322.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 319.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 305.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 301.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 295.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 294.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 291.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 290.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 287.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 284.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 279.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 278.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 277.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 273.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 272.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 269.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 269.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 263.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 263.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 262.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 260.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 256.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 255.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 254.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 254.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 254.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 253.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 253.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 251.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 248.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 248.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 247.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 244.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 244.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 243.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 242.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 241.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 241.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 239.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 235.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 235.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 233.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 232.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 231.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 229.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 228.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 228.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 227.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 226.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 223.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 222.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 221.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 219.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 219.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 218.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 218.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 217.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 216.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 216.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 215.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 214.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 213.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 213.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 211.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 211.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 210.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 210.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 209.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 209.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 206.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 206.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 204.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 202.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 202.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 201.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 201.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 200.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 200.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 198.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 197.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 197.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 196.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 196.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 196.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 195.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 195.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 195.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 195.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 194.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 194.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 194.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 192.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 192.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 191.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 191.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 191.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 190.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 189.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 189.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 188.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 188.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 186.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 186.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 185.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 185.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 185.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 184.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 183.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 182.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 182.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 182.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 181.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 178.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 177.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 177.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 176.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 174.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 174.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 172.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 172.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 171.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 170.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 169.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 169.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 169.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 168.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 163.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 163.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 162.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 162.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 162.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 160.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 160.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 157.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 154.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 152.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 152.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 149.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 148.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 147.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 145.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 142.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 141.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 138.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 126.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

149.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 149.5
FF:10151-102I7 76 years, female 149.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.8
Pig sample Sample description nTPM
Amygdala
nTPM: 208.8
Samples: 4

Max nTPM: 265.9
Min nTPM: 159.3
Sample A Female 265.9
Sample B Female 226.8
Sample C Male 183.1
Sample D Male 159.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 382.6
Samples: 4

Max nTPM: 388.7
Min nTPM: 371.4
Sample A Male 371.4
Sample B Male 386.1
Sample C Female 388.7
Sample D Female 384.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.8
74990518 Antisense, RP_060410_01_B12, Mouse strain C57BL/6J (56 days, male) 18.8

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