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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:164.3 nTPM
HPA:164.3 nTPM
GTEx:136.5 nTPM
FANTOM5:172.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042123Antibody HPA048064Antibody CAB037314
Glandular cells MediumNot detectedMedium






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.3
overview
Male, age 65
Small intestine sample 232
nTPM: 178.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 147.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 159.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 171.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 136.5
Samples: 187

Max nTPM: 245.5
Min nTPM: 77.1
Std nTPM: 25.2
Median nTPM: 132.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 245.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 240.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 215.7
GTEX-1192X-2526-SM-59868 50-59 years, male 208.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 199.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 199.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 195.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 193.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 192.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 184.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 183.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 180.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 174.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 173.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 171.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 170.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 169.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 168.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 167.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 167.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 165.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 165.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 164.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 161.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 160.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 159.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 159.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 159.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 156.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 156.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 154.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 154.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 153.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 153.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 151.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 151.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 151.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 150.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 150.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 150.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 149.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 149.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 149.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 148.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 148.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 147.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 146.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 146.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 146.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 145.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 145.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 145.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 144.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 144.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 144.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 143.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 143.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 143.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 142.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 142.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 142.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 141.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 140.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 140.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 139.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 139.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 139.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 139.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 139.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 139.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 138.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 138.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 137.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 137.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 137.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 137.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 137.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 136.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 136.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 135.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 135.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 135.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 134.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 134.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 134.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 134.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 134.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 134.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 134.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 133.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 132.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 132.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 132.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 132.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 132.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 131.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 131.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 131.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 131.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 130.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 130.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 130.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 130.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 130.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 130.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 129.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 129.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 129.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 129.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 129.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 128.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 128.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 128.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 128.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 128.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 127.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 127.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 127.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 127.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 127.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 127.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 126.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 126.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 126.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 125.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 125.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 124.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 124.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 123.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 123.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 123.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 123.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 123.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 123.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 122.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 121.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 121.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 121.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 121.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 121.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 120.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 120.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 120.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 119.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 119.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 119.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 118.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 118.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 118.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 118.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 117.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 117.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 117.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 117.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 117.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 117.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 116.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 116.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 116.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 116.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 115.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 114.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 113.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 113.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 112.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 112.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 111.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 110.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 110.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 108.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 108.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 107.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 106.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 106.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 103.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 103.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 102.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 101.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 101.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 101.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 98.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 98.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 96.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 95.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 95.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 93.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 77.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

172.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 172.3
FF:10024-101D6 15,40,85 years, mixed 172.3

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