MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.9 nTPM
HPA Brain:129.3 nTPM
GTEx:65.9 nTPM
FANTOM5:182.3 Scaled Tags Per Million
Mouse:38.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 129.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.1
1830 Male, age 51, unknown 142.8
1833 Male, age 53, unknown 134.6
1870 Female, age 42, unknown 127.5
2019 Male, age 18, unknown 127.4
2411 Female, age 72, unknown 126.0
2828 Female, age 72, unknown 89.2
2586 Male, age 75, left hemisphere 81.8
2666 Male, age 74, left hemisphere 79.0
1827 Male, age 72, unknown 74.2
2219 Male, age 76, both hemispheres 58.1
Dorsal raphe nucleus
nTPM: 84.8
2750 Male, age 76, both hemispheres 118.9
2016 Female, age 72, unknown 85.9
1828 Male, age 53, unknown 83.5
2298 Female, age 72, unknown 73.9
2047 Male, age 72, unknown 61.9
Inferior colliculus
nTPM: 68.9
1848 Female, age 42, unknown 81.7
2849 Male, age 72, unknown 71.2
1890 Male, age 53, unknown 69.9
2097 Female, age 72, unknown 52.6
Median raphe nucleus
nTPM: 87.3
2220 Male, age 76, midline 87.3
Periaquaductal grey, anterior
nTPM: 67.4
2502 Female, age 75, unknown 82.8
1947 Male, age 18, unknown 63.5
1795 Male, age 51, unknown 56.0
Periaquaductal grey, dorsal
nTPM: 66.6
2850 Male, age 76, both hemispheres 81.7
2464 Female, age 72, unknown 72.8
1831 Male, age 72, unknown 63.2
1840 Male, age 53, unknown 48.9
Periaquaductal grey, lateral
nTPM: 78.6
2272 Male, age 74, both hemispheres 87.7
2053 Male, age 18, unknown 77.3
2140 Male, age 76, both hemispheres 70.8
Pretectal area
nTPM: 73.9
1815 Male, age 53, unknown 90.8
2407 Male, age 75, both hemispheres 90.4
2273 Male, age 74, both hemispheres 88.4
2316 Male, age 76, right hemisphere 83.9
1817 Female, age 42, unknown 79.2
2224 Female, age 72, unknown 76.3
2825 Male, age 18, unknown 75.6
2007 Male, age 72, unknown 72.0
2667 Female, age 75, unknown 66.0
1944 Female, age 72, unknown 48.9
1816 Male, age 51, unknown 41.1
Red nucleus
nTPM: 129.3
1865 Male, age 51, unknown 172.7
1904 Male, age 53, unknown 150.2
2769 Male, age 72, unknown 145.6
1821 Female, age 72, unknown 144.8
2227 Male, age 72, unknown 144.7
2785 Male, age 18, unknown 133.5
2823 Male, age 76, right hemisphere 129.6
1954 Female, age 42, unknown 121.3
2503 Female, age 72, unknown 114.3
2584 Male, age 75, left hemisphere 106.4
2725 Female, age 75, unknown 95.6
2588 Male, age 74, left hemisphere 93.3
Substantia nigra
nTPM: 92.4
2590 Female, age 75, unknown 124.0
2699 Male, age 18, unknown 111.2
1851 Male, age 51, unknown 107.8
2583 Male, age 75, right hemisphere 104.5
2409 Female, age 72, unknown 96.9
1889 Female, age 72, unknown 84.6
2241 Male, age 72, unknown 78.4
2665 Male, age 74, both hemispheres 76.5
1916 Female, age 42, unknown 72.0
1941 Male, age 53, unknown 68.4
Superior colliculus
nTPM: 87.1
1913 Female, age 42, unknown 136.1
1995 Male, age 72, unknown 131.3
2587 Male, age 74, left hemisphere 106.5
1839 Male, age 51, unknown 88.8
1895 Male, age 76, right hemisphere 82.9
2664 Male, age 75, both hemispheres 72.6
1796 Male, age 53, unknown 71.0
2668 Female, age 75, unknown 70.9
2087 Female, age 72, unknown 59.8
2261 Male, age 18, unknown 50.9
Ventral tegmental area
nTPM: 97.5
2223 Female, age 72, unknown 131.4
2410 Female, age 72, unknown 108.6
2021 Male, age 53, unknown 95.8
2218 Male, age 76, both hemispheres 87.8
1915 Female, age 42, unknown 81.2
1942 Male, age 51, unknown 80.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.9
Samples: 139

Max nTPM: 154.4
Min nTPM: 19.3
Std nTPM: 23.2
Median nTPM: 61.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 154.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 130.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 124.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 121.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 119.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 115.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 115.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 113.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 111.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 110.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 109.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 182.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 182.3
FF:10158-103A5 76 years, female 182.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 42.9
Min nTPM: 35.1
Sample A Male 42.9
Sample B Male 37.4
Sample C Female 35.1
Sample D Female 37.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68269586 Antisense, RP_041129_01_H03, Mouse strain C57BL/6J (56 days, male) 0.3

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