We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
JPT1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • JPT1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:52.4 nTPM
HPA Brain:40.2 nTPM
GTEx:52.4 nTPM
FANTOM5:47.1 Scaled Tags Per Million
Pig:71.0 nTPM
Mouse:153.7 nTPM
Allen mouse:5.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.2
Sample id Sample description nTPM
Amygdala
nTPM: 29.2
1987 Female, age 91, left hemisphere 37.8
2517 Female, age 94, left hemisphere 32.8
2514 Male, age 75, right hemisphere 26.7
2814 Male, age 76, right hemisphere 26.6
2695 Female, age 67, right hemisphere 21.9
Basal amygdala
nTPM: 32.8
2243 Female, age 91, right hemisphere 55.9
2685 Female, age 94, left hemisphere 35.7
2110 Male, age 80, left hemisphere 35.1
1955 Male, age 76, both hemispheres 27.1
2609 Male, age 75, right hemisphere 23.3
2827 Female, age 67, right hemisphere 19.9
Central amygdala
nTPM: 30.0
2239 Male, age 80, left hemisphere 39.6
2701 Female, age 91, right hemisphere 31.5
2826 Female, age 94, left hemisphere 28.5
1905 Male, age 76, both hemispheres 26.3
2515 Male, age 75, right hemisphere 24.1
Corticomedial amygdala
nTPM: 40.2
2242 Female, age 91, right hemisphere 60.9
2829 Male, age 80, left hemisphere 54.1
2429 Female, age 94, left hemisphere 36.2
2535 Female, age 67, right hemisphere 33.2
2240 Male, age 76, both hemispheres 28.3
2428 Male, age 75, right hemisphere 28.3
Lateral amygdala
nTPM: 24.8
2534 Female, age 94, left hemisphere 41.6
1883 Male, age 76, both hemispheres 28.4
2255 Female, age 91, right hemisphere 25.9
2256 Male, age 80, left hemisphere 21.2
2516 Male, age 75, right hemisphere 18.3
2830 Female, age 67, right hemisphere 13.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 52.4
Samples: 152

Max nTPM: 188.2
Min nTPM: 16.1
Std nTPM: 27.1
Median nTPM: 45.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 188.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 182.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 120.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 117.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 108.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 107.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 107.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 104.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 95.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 93.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 92.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 92.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 91.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 90.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 86.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 83.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 82.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 80.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 80.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 80.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 79.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 78.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 75.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 75.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 75.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 72.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 71.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 70.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 70.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 69.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 69.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 68.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 67.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 67.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 66.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 66.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 65.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 64.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 64.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 62.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 62.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 61.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 61.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 61.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 61.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 60.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 59.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 59.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 59.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 58.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 58.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 58.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 57.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 57.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 56.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 56.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 55.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 55.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 54.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 54.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 54.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 54.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 54.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 51.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 50.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 49.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 49.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 49.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 49.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 48.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 48.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 48.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 48.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 47.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 47.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 45.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 45.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 45.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 44.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 44.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 44.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 43.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 42.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 42.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 42.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 42.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 40.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 40.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 40.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 39.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 39.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 39.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 39.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 39.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 39.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 39.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 39.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 39.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 39.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 39.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 39.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 38.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 38.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 38.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 36.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 36.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 36.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 35.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 35.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 35.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 35.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 35.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 35.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 34.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 34.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 33.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 32.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 32.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 31.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 31.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 31.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 31.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 30.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 29.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 29.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 28.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 28.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 28.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 27.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 27.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 27.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 26.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 26.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 26.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 25.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 25.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 25.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 25.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 25.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 24.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 24.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 23.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 23.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 23.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 22.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 22.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 21.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 20.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 19.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 19.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 16.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 16.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 47.1
FF:10151-102I7 76 years, female 47.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.0
Pig sample Sample description nTPM
Amygdala
nTPM: 71.0
Samples: 4

Max nTPM: 92.7
Min nTPM: 59.8
Sample A Female 92.7
Sample B Female 59.8
Sample C Male 62.9
Sample D Male 68.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 153.7
Samples: 4

Max nTPM: 160.5
Min nTPM: 149.1
Sample A Male 155.0
Sample B Male 160.5
Sample C Female 149.1
Sample D Female 150.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.4
70431361 Antisense, RP_050614_02_F09, Mouse strain C57BL/6J (56 days, male) 5.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org