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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:168.3 nTPM
HPA Brain:122.5 nTPM
GTEx:168.3 nTPM
FANTOM5:349.6 Scaled Tags Per Million
Pig:191.2 nTPM
Mouse:459.2 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.5
Sample id Sample description nTPM
Amygdala
nTPM: 116.5
1987 Female, age 91, left hemisphere 148.4
2814 Male, age 76, right hemisphere 121.6
2514 Male, age 75, right hemisphere 111.5
2517 Female, age 94, left hemisphere 105.1
2695 Female, age 67, right hemisphere 95.8
Basal amygdala
nTPM: 102.2
2243 Female, age 91, right hemisphere 124.1
2685 Female, age 94, left hemisphere 112.3
1955 Male, age 76, both hemispheres 105.5
2110 Male, age 80, left hemisphere 105.3
2609 Male, age 75, right hemisphere 103.2
2827 Female, age 67, right hemisphere 62.7
Central amygdala
nTPM: 122.5
2239 Male, age 80, left hemisphere 132.2
2826 Female, age 94, left hemisphere 126.1
2701 Female, age 91, right hemisphere 125.3
1905 Male, age 76, both hemispheres 118.3
2515 Male, age 75, right hemisphere 110.8
Corticomedial amygdala
nTPM: 115.5
2242 Female, age 91, right hemisphere 133.4
2429 Female, age 94, left hemisphere 132.1
2829 Male, age 80, left hemisphere 130.1
2428 Male, age 75, right hemisphere 106.4
2240 Male, age 76, both hemispheres 104.3
2535 Female, age 67, right hemisphere 86.7
Lateral amygdala
nTPM: 103.2
2534 Female, age 94, left hemisphere 137.3
1883 Male, age 76, both hemispheres 123.7
2256 Male, age 80, left hemisphere 103.3
2255 Female, age 91, right hemisphere 96.7
2516 Male, age 75, right hemisphere 91.8
2830 Female, age 67, right hemisphere 66.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 168.3
Samples: 152

Max nTPM: 329.8
Min nTPM: 67.6
Std nTPM: 49.5
Median nTPM: 162.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 329.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 282.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 280.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 276.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 264.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 263.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 260.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 259.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 256.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 252.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 252.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 249.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 249.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 242.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 240.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 237.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 236.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 236.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 231.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 230.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 229.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 224.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 220.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 217.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 216.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 215.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 214.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 214.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 213.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 213.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 211.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 209.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 209.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 206.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 206.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 204.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 202.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 202.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 200.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 199.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 199.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 199.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 197.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 197.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 197.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 196.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 194.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 190.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 186.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 186.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 186.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 184.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 183.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 183.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 183.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 182.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 182.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 181.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 178.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 177.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 175.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 173.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 173.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 171.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 169.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 169.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 169.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 168.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 168.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 166.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 166.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 165.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 165.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 163.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 163.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 163.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 162.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 162.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 161.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 159.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 158.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 157.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 157.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 157.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 156.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 155.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 154.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 152.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 152.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 151.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 150.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 150.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 149.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 149.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 147.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 145.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 143.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 141.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 141.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 141.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 138.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 138.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 137.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 137.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 136.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 135.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 133.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 133.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 133.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 133.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 132.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 132.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 131.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 131.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 130.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 130.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 127.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 126.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 125.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 125.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 125.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 125.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 125.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 123.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 123.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 123.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 122.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 122.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 121.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 119.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 117.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 116.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 116.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 116.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 113.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 112.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 112.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 108.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 106.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 106.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 103.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 101.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 101.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 101.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 100.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 94.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 89.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 84.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 84.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 82.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 69.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 67.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

349.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 349.6
FF:10151-102I7 76 years, female 349.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.2
Pig sample Sample description nTPM
Amygdala
nTPM: 191.2
Samples: 4

Max nTPM: 281.1
Min nTPM: 143.7
Sample A Female 281.1
Sample B Female 143.7
Sample C Male 162.6
Sample D Male 177.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

459.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 459.2
Samples: 4

Max nTPM: 508.2
Min nTPM: 409.7
Sample A Male 508.2
Sample B Male 466.5
Sample C Female 409.7
Sample D Female 452.5

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