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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:168.9 nTPM
HPA Brain:144.4 nTPM
GTEx:168.9 nTPM
FANTOM5:313.6 Scaled Tags Per Million
Pig:317.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 108.9
1981 Female, age 72, midline 129.8
2565 Male, age 75, midline 121.0
2194 Female, age 79, both hemispheres 110.5
2816 Male, age 47, midline 91.7
2048 Male, age 55, midline 91.4
Cervical spinal cord, dorsal horn
nTPM: 144.4
2069 Male, age 47, both hemispheres 159.9
2173 Female, age 72, unknown 154.4
2296 Male, age 66, both hemispheres 149.3
2297 Male, age 75, both hemispheres 142.6
1877 Male, age 55, unknown 133.1
2721 Male, age 90, both hemispheres 126.9
Cervical spinal cord, ventral horn
nTPM: 122.3
2480 Male, age 75, both hemispheres 154.2
2098 Female, age 72, unknown 130.9
2809 Male, age 90, both hemispheres 130.1
2068 Male, age 55, unknown 107.6
2820 Female, age 79, both hemispheres 107.3
2295 Male, age 66, both hemispheres 103.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 168.9
Samples: 159

Max nTPM: 284.3
Min nTPM: 70.5
Std nTPM: 41.5
Median nTPM: 164.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 284.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 276.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 275.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 267.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 261.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 260.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 247.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 244.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 242.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 241.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 240.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 238.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 237.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 232.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 230.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 229.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 229.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 223.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 222.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 213.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 212.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 211.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 211.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 208.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 208.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 207.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 207.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 205.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 204.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 203.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 203.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 202.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 202.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 198.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 197.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 196.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 196.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 195.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 194.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 193.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 193.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 191.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 190.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 190.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 190.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 189.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 189.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 189.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 189.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 189.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 189.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 186.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 185.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 184.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 184.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 183.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 183.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 182.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 182.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 182.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 182.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 181.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 181.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 180.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 180.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 179.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 178.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 176.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 175.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 174.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 170.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 169.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 168.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 167.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 166.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 166.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 165.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 165.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 164.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 164.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 163.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 163.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 162.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 160.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 160.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 159.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 159.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 158.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 157.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 157.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 157.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 157.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 156.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 156.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 156.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 155.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 154.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 153.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 153.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 152.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 151.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 151.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 149.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 149.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 149.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 149.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 148.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 146.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 143.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 142.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 142.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 142.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 141.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 140.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 139.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 139.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 139.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 138.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 138.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 137.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 137.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 135.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 134.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 134.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 133.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 133.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 133.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 132.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 132.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 131.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 131.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 131.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 130.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 126.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 126.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 125.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 125.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 125.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 125.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 123.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 122.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 122.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 119.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 116.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 115.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 114.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 114.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 112.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 111.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 109.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 109.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 106.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 106.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 104.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 104.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 102.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 100.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 82.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 70.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

313.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 313.6
FF:10159-103A6 76 years, female 319.5
FF:10181-103D1 60 years, female 307.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

317.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 313.0
Samples: 4

Max nTPM: 425.1
Min nTPM: 248.3
Sample A Female 281.0
Sample B Female 248.3
Sample C Male 425.1
Sample D Male 297.4
Ventral spinal cord
nTPM: 317.2
Samples: 4

Max nTPM: 365.8
Min nTPM: 284.6
Sample A Female 332.0
Sample B Female 286.2
Sample C Male 365.8
Sample D Male 284.6

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